Variant report

Variant	rs71356024
Chromosome Location	chr19:37426279-37426280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10401417	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10404981	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10405238	0.94[ASN][1000 genomes]
rs10407712	0.98[ASN][1000 genomes]
rs10408534	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10409206	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10410594	0.96[ASN][1000 genomes]
rs10411251	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10412863	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10416960	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10420859	0.98[ASN][1000 genomes]
rs10424100	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12710052	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12977971	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12981965	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13345489	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1551025	0.98[ASN][1000 genomes]
rs1623097	0.98[ASN][1000 genomes]
rs1624293	0.98[ASN][1000 genomes]
rs1644664	0.96[ASN][1000 genomes]
rs1644701	0.88[ASN][1000 genomes]
rs1667357	0.94[ASN][1000 genomes]
rs1667359	0.94[ASN][1000 genomes]
rs16971850	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17639910	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17707101	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2595552	0.94[ASN][1000 genomes]
rs28412852	0.85[AFR][1000 genomes]
rs28495495	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28542490	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28555503	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28608841	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28655720	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34791663	0.98[ASN][1000 genomes]
rs35881914	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3816390	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3816391	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4806376	0.85[ASN][1000 genomes]
rs4806377	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4806386	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62113193	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62115612	0.85[ASN][1000 genomes]
rs62115615	0.87[ASN][1000 genomes]
rs6510572	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71266562	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7249013	0.90[ASN][1000 genomes]
rs7250498	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7251087	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7252797	0.94[ASN][1000 genomes]
rs8101062	0.87[AFR][1000 genomes]
rs8112709	0.88[EUR][1000 genomes]
rs997516	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv911651	chr19:37300554-37428465	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
16	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37408200-37436400	Weak transcription	Fetal Thymus	thymus
2	chr19:37408200-37440600	Weak transcription	Stomach Mucosa	stomach
3	chr19:37408400-37440600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:37408600-37439600	Weak transcription	Fetal Heart	heart
5	chr19:37409000-37444800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:37409000-37447400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:37410600-37427600	Weak transcription	NH-A	brain
8	chr19:37413600-37427600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr19:37413800-37427400	Weak transcription	Right Ventricle	heart
10	chr19:37413800-37427600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr19:37413800-37427800	Weak transcription	HSMMtube	muscle
12	chr19:37413800-37428000	Weak transcription	HUVEC	blood vessel
13	chr19:37415800-37444600	ZNF genes & repeats	Liver	Liver
14	chr19:37416200-37427800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr19:37418600-37427400	Weak transcription	HSMM	muscle
16	chr19:37419400-37447400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr19:37420600-37443000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr19:37420600-37447400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr19:37420600-37447600	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr19:37421600-37427600	Weak transcription	Fetal Kidney	kidney
21	chr19:37422200-37427800	Weak transcription	Placenta	Placenta
22	chr19:37422400-37427400	Weak transcription	Brain Substantia Nigra	brain
23	chr19:37422400-37427600	Weak transcription	Colon Smooth Muscle	Colon
24	chr19:37422600-37427600	Weak transcription	Brain Germinal Matrix	brain
25	chr19:37422600-37427600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr19:37422600-37427600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr19:37423000-37427600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr19:37423000-37427600	Weak transcription	NHDF-Ad	bronchial
29	chr19:37423000-37427600	Weak transcription	Osteobl	bone
30	chr19:37423000-37428200	Weak transcription	Fetal Brain Male	brain
31	chr19:37423400-37427600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr19:37423400-37427800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr19:37423600-37427400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr19:37423600-37427600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr19:37423600-37427600	Weak transcription	Brain Anterior Caudate	brain
36	chr19:37423600-37427600	Weak transcription	Fetal Muscle Leg	muscle
37	chr19:37423600-37427600	Weak transcription	Gastric	stomach
38	chr19:37423600-37427600	Weak transcription	Left Ventricle	heart
39	chr19:37423600-37427600	Weak transcription	Pancreas	Pancrea
40	chr19:37423600-37427600	Weak transcription	Psoas Muscle	Psoas
41	chr19:37423600-37427600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr19:37423600-37427800	Weak transcription	Small Intestine	intestine
43	chr19:37423600-37428000	Weak transcription	Thymus	Thymus
44	chr19:37423600-37430000	Weak transcription	Fetal Stomach	stomach
45	chr19:37423800-37427600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr19:37423800-37427600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr19:37424000-37427400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr19:37424200-37427400	Weak transcription	Primary T cells from cord blood	blood
49	chr19:37424200-37427600	Weak transcription	Fetal Lung	lung
50	chr19:37424400-37426800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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