Variant report

Variant	rs10427116
Chromosome Location	chr19:21300887-21300888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10402408	0.92[AFR][1000 genomes]
rs10404889	0.92[AFR][1000 genomes]
rs10412621	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv960811	chr19:21200306-21371757	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv3399352	chr19:21232738-21423323	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1065384	chr19:21249321-21350698	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv911413	chr19:21263518-21347598	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv3319019	chr19:21268262-21336383	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv3319020	chr19:21268262-21336383	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	esv7695	chr19:21268276-21328430	Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
10	esv5909	chr19:21272333-21334753	Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	esv3420290	chr19:21272477-21336432	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	esv3391713	chr19:21272485-21334631	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
13	esv5243	chr19:21272548-21334670	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	esv7204	chr19:21274198-21336396	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
15	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
16	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21265600-21305200	Weak transcription	Psoas Muscle	Psoas
2	chr19:21265800-21302200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr19:21265800-21302800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr19:21265800-21303000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr19:21266200-21301600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:21275400-21301400	Weak transcription	Fetal Brain Male	brain
7	chr19:21275400-21304600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr19:21284200-21302600	Weak transcription	Brain Substantia Nigra	brain
9	chr19:21284600-21306800	Weak transcription	Left Ventricle	heart
10	chr19:21285200-21302000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr19:21288600-21305400	Weak transcription	Fetal Heart	heart
12	chr19:21288800-21303600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr19:21290400-21301200	Weak transcription	Placenta	Placenta
14	chr19:21290600-21303400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:21291600-21307800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr19:21294200-21302200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
17	chr19:21294600-21301800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr19:21296000-21303200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr19:21296200-21304400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:21296400-21306800	Weak transcription	NH-A	brain
21	chr19:21296600-21303600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr19:21297200-21301600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr19:21297200-21301600	Weak transcription	Fetal Stomach	stomach
24	chr19:21297200-21301800	Weak transcription	Esophagus	oesophagus
25	chr19:21297400-21301600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr19:21297400-21302800	Weak transcription	Fetal Intestine Small	intestine
27	chr19:21297600-21305000	Weak transcription	Fetal Lung	lung
28	chr19:21297600-21310600	Weak transcription	HepG2	liver
29	chr19:21297800-21301000	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
30	chr19:21297800-21301800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr19:21297800-21301800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr19:21297800-21303000	Weak transcription	Colon Smooth Muscle	Colon
33	chr19:21297800-21311200	Weak transcription	Right Ventricle	heart
34	chr19:21298000-21301200	Weak transcription	HSMMtube	muscle
35	chr19:21298400-21302000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr19:21298600-21301000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
37	chr19:21298800-21301000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
38	chr19:21298800-21303800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr19:21298800-21305800	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr19:21299000-21301400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
41	chr19:21299000-21302200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr19:21299000-21303200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr19:21299000-21303400	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr19:21299000-21305400	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr19:21299200-21301200	Strong transcription	Fetal Thymus	thymus
46	chr19:21299200-21301800	Strong transcription	Osteobl	bone
47	chr19:21299200-21302000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr19:21299200-21302200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr19:21299200-21302400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr19:21299200-21302400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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