Variant report

Variant	rs10427443
Chromosome Location	chr20:41141073-41141074
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11904854	0.93[EUR][1000 genomes]
rs11907041	0.92[YRI][hapmap]
rs6016806	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6016807	1.00[CEU][hapmap];0.93[GIH][hapmap];0.93[EUR][1000 genomes]
rs6016808	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6016810	1.00[CEU][hapmap];0.93[GIH][hapmap];0.96[EUR][1000 genomes]
rs6016811	1.00[CEU][hapmap];0.93[GIH][hapmap]
rs6030272	0.81[EUR][1000 genomes]
rs6030273	0.93[EUR][1000 genomes]
rs6030274	1.00[CEU][hapmap];0.93[GIH][hapmap];0.93[EUR][1000 genomes]
rs6030275	0.96[EUR][1000 genomes]
rs6030276	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6030277	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6030282	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6030286	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6030287	1.00[CEU][hapmap]
rs6030289	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6093659	1.00[CEU][hapmap];0.93[GIH][hapmap];0.96[EUR][1000 genomes]
rs6093660	1.00[CEU][hapmap];0.93[GIH][hapmap];0.96[EUR][1000 genomes]
rs6102855	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6102856	0.96[EUR][1000 genomes]
rs6102859	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6102860	1.00[CEU][hapmap];0.93[GIH][hapmap];0.93[EUR][1000 genomes]
rs6102870	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6102871	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7263792	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs73273400	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73274816	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8115413	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv1059852	chr20:41087948-41217672	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv544276	chr20:41087948-41217672	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1055546	chr20:41102999-41260749	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv1807209	chr20:41107678-41154898	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1061449	chr20:41126720-41212178	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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