Variant report

Variant	rs10429329
Chromosome Location	chr8:68453460-68453461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10429330	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262307	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262388	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16933366	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1818154	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1818155	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1818156	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047833	0.86[EUR][1000 genomes]
rs2134598	0.96[ASN][1000 genomes]
rs4737840	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4737843	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737844	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737845	0.91[EUR][1000 genomes]
rs7000339	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68451600-68454400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr8:68452000-68454400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr8:68452000-68454600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr8:68452200-68453600	Enhancers	Dnd41	blood
5	chr8:68452200-68454600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:68452800-68453600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr8:68452800-68454000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:68452800-68454200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr8:68452800-68459000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:68453000-68453600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr8:68453000-68454200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr8:68453000-68454600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr8:68453200-68453600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr8:68453400-68453600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr8:68453400-68453600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr8:68453400-68453800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:68453400-68453800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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