Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68436129..68437691-chr8:68438991..68441114,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10429329	0.86[EUR][1000 genomes]
rs10429330	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs10957390	0.82[JPT][hapmap]
rs10957391	0.83[CEU][hapmap]
rs11785565	0.81[JPT][hapmap]
rs13262307	0.88[EUR][1000 genomes]
rs13262388	0.88[EUR][1000 genomes]
rs16933366	1.00[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs1818154	0.89[EUR][1000 genomes]
rs1818155	0.87[EUR][1000 genomes]
rs1818156	0.88[EUR][1000 genomes]
rs2380414	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap]
rs2380415	0.82[JPT][hapmap]
rs2380416	0.82[JPT][hapmap]
rs4737239	0.82[JPT][hapmap]
rs4737840	0.95[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs4737843	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4737844	0.88[EUR][1000 genomes]
rs4737845	0.95[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6472317	0.96[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs7000339	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7002272	0.85[JPT][hapmap]
rs7017892	1.00[CEU][hapmap]
rs7824497	0.84[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7831538	1.00[CEU][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68437000-68440200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:68439400-68440200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:68439600-68440800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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