Variant report

Variant	rs10957391
Chromosome Location	chr8:68458267-68458268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10429330	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs10957390	0.88[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11785565	0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16933366	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs1948823	0.81[JPT][hapmap]
rs2047833	0.83[CEU][hapmap]
rs2380414	0.83[CEU][hapmap]
rs2380415	0.83[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2380416	0.83[CEU][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2380417	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28828153	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4737239	0.91[CEU][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4737843	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs4737845	0.86[CEU][hapmap]
rs6472317	0.87[CEU][hapmap]
rs7002272	0.84[JPT][hapmap]
rs7013762	0.84[CEU][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7017892	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs7017897	0.81[JPT][hapmap]
rs7824497	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7831538	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs924740	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs924741	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs924742	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68452800-68459000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:68457200-68469000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:68458200-68458400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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