Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10429330	0.90[JPT][hapmap]
rs10957390	0.81[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10957391	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11778942	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs11785565	1.00[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs12681574	0.93[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap]
rs16933366	0.90[JPT][hapmap]
rs1948823	0.90[JPT][hapmap]
rs2380415	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2380416	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2380417	0.93[ASN][1000 genomes]
rs28828153	0.93[ASN][1000 genomes]
rs4737239	1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4737840	0.85[JPT][hapmap]
rs4737843	0.90[JPT][hapmap]
rs7002272	0.89[JPT][hapmap]
rs7013762	0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7017892	0.90[JPT][hapmap]
rs7017897	0.90[JPT][hapmap]
rs7831538	0.90[JPT][hapmap]
rs924741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs924742	0.94[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68457200-68469000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:68458400-68468600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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