Variant report

Variant	rs4737840
Chromosome Location	chr8:68439797-68439798
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:68436129..68437691-chr8:68438991..68441114,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10429329	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10429330	0.95[CEU][hapmap];0.83[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.83[MEX][hapmap];0.92[MKK][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13262307	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13262388	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16933366	0.95[CEU][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.96[MKK][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1818154	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1818155	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1818156	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1948823	0.95[JPT][hapmap]
rs2047833	0.95[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs2134598	0.83[ASN][1000 genomes]
rs2380414	0.95[CEU][hapmap]
rs4737843	0.95[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4737844	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4737845	0.91[CEU][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs6472317	0.91[CEU][hapmap]
rs7000339	0.83[EUR][1000 genomes]
rs7002272	0.93[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs7017892	0.95[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs7017897	0.83[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs7824497	0.80[CEU][hapmap]
rs7831538	0.95[CEU][hapmap];0.83[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap]
rs924740	0.85[JPT][hapmap]
rs924741	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4737840	PTTG3P	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68437000-68440200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:68439400-68440200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:68439600-68440800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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