Variant report

Variant	rs10434715
Chromosome Location	chr5:154108241-154108242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10463258	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12652443	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653909	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1467294	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17116362	1.00[EUR][1000 genomes]
rs17116407	1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17116424	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17116430	1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17116466	0.90[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs4958768	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021153	chr5:154099869-154147970	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154074200-154108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:154074200-154120000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:154102200-154111000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:154102200-154117400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:154103000-154111000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:154103200-154108400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:154103800-154110800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:154104000-154120000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr5:154104400-154109400	Weak transcription	Stomach Mucosa	stomach
10	chr5:154104400-154118600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:154104600-154117600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr5:154107200-154108400	Weak transcription	HepG2	liver
13	chr5:154107200-154108600	Weak transcription	Liver	Liver
14	chr5:154107200-154133200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr5:154107800-154108800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:154107800-154109200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:154108000-154108600	Enhancers	Psoas Muscle	Psoas
18	chr5:154108200-154108600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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