Variant report

Variant	rs17116362
Chromosome Location	chr5:154061125-154061126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr5:154061054-154061569	K562	blood:	n/a	n/a
2	ATF1	chr5:154061111-154061496	K562	blood:	n/a	n/a
3	ZMIZ1	chr5:154061110-154061231	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:154059219..154066449-chr5:154131053..154139153,28	MCF-7	breast:
2	chr5:154032924..154035953-chr5:154060890..154064401,4	K562	blood:
3	chr5:154061087..154064928-chr5:154133720..154137511,10	MCF-7	breast:
4	chr5:154060708..154062713-chr5:154065888..154067569,2	MCF-7	breast:
5	chr5:154057419..154059228-chr5:154060984..154063481,2	MCF-7	breast:
6	chr5:154059571..154067369-chr5:154132796..154138140,13	K562	blood:
7	chr5:154060599..154064575-chr5:154133211..154138140,11	K562	blood:

No data

Variant related genes	Relation type
MIR1303	TF binding region
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10434715	1.00[EUR][1000 genomes]
rs10463258	1.00[EUR][1000 genomes]
rs12652443	1.00[EUR][1000 genomes]
rs12653909	1.00[EUR][1000 genomes]
rs1467294	1.00[EUR][1000 genomes]
rs17116407	1.00[EUR][1000 genomes]
rs17116424	1.00[EUR][1000 genomes]
rs17116430	1.00[EUR][1000 genomes]
rs17116466	1.00[EUR][1000 genomes]
rs4958768	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462491	chr5:154045280-154066205	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv600090	chr5:154045280-154066205	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154042800-154061600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:154048600-154062000	Weak transcription	Right Atrium	heart
3	chr5:154054000-154062000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:154057800-154061600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:154057800-154061600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:154057800-154061600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:154057800-154061600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:154057800-154061600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:154057800-154061600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:154057800-154061600	Weak transcription	Fetal Heart	heart
11	chr5:154057800-154061600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr5:154057800-154061800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:154057800-154061800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:154057800-154062000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:154058000-154061600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:154058000-154061600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:154058000-154061600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr5:154058000-154061600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:154058000-154061600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:154058000-154061600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr5:154058000-154061800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:154059400-154062000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr5:154059800-154061800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:154059800-154061800	Weak transcription	Esophagus	oesophagus
25	chr5:154059800-154062000	Weak transcription	Pancreas	Pancrea
26	chr5:154060400-154061400	Weak transcription	Fetal Intestine Small	intestine
27	chr5:154060400-154061400	Enhancers	HepG2	liver
28	chr5:154060800-154070000	Weak transcription	Gastric	stomach
29	chr5:154061000-154062000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr5:154061000-154062000	Enhancers	K562	blood

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