Variant report

Variant	rs1467294
Chromosome Location	chr5:154117775-154117776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10434715	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10463258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12652443	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12653909	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17116362	1.00[EUR][1000 genomes]
rs17116407	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17116424	1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17116430	1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17116466	0.90[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021153	chr5:154099869-154147970	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154074200-154120000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:154104000-154120000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:154104400-154118600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:154107200-154133200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:154109200-154120000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:154109600-154120000	Weak transcription	Liver	Liver
7	chr5:154109600-154120800	Weak transcription	Stomach Mucosa	stomach
8	chr5:154111200-154120400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:154111400-154120200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:154112000-154120800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr5:154112200-154123600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:154112600-154120200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:154113000-154120400	Weak transcription	Psoas Muscle	Psoas
14	chr5:154115800-154120400	Weak transcription	Left Ventricle	heart
15	chr5:154116200-154132400	Weak transcription	Fetal Intestine Small	intestine
16	chr5:154116400-154119200	Weak transcription	Adipose Nuclei	Adipose
17	chr5:154117000-154120000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr5:154117200-154117800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr5:154117200-154117800	Enhancers	Placenta Amnion	Placenta Amnion
20	chr5:154117200-154118000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:154117200-154118000	Enhancers	HepG2	liver
22	chr5:154117400-154117800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr5:154117400-154117800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:154117400-154117800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr5:154117400-154117800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr5:154117400-154117800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:154117400-154118000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr5:154117400-154118000	Strong transcription	Pancreas	Pancrea
29	chr5:154117600-154117800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:154117600-154117800	ZNF genes & repeats	Gastric	stomach
31	chr5:154117600-154117800	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr5:154117600-154117800	Enhancers	Spleen	Spleen

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