Variant report

Variant	rs10435944
Chromosome Location	chr9:85221185-85221186
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11139637	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11139642	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11139643	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11139645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139647	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17085617	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17085618	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66662330	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66818511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66976113	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67169967	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10435944	LOC162632	trans	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85217200-85221200	Weak transcription	Fetal Heart	heart
2	chr9:85219600-85221200	Enhancers	Fetal Stomach	stomach
3	chr9:85219600-85221400	Enhancers	Colon Smooth Muscle	Colon
4	chr9:85219600-85221400	Enhancers	Fetal Intestine Large	intestine
5	chr9:85219600-85221800	Enhancers	Liver	Liver
6	chr9:85219600-85221800	Enhancers	Fetal Kidney	kidney
7	chr9:85219600-85222000	Enhancers	Fetal Lung	lung
8	chr9:85220000-85221200	Enhancers	Rectal Smooth Muscle	rectum
9	chr9:85220200-85221600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:85220400-85221200	Enhancers	Pancreas	Pancrea
11	chr9:85220800-85221800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr9:85220800-85221800	Enhancers	Fetal Muscle Leg	muscle
13	chr9:85220800-85221800	Enhancers	HepG2	liver
14	chr9:85221000-85221200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:85221000-85221600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:85221000-85221800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr9:85221000-85221800	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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