Variant report

Variant	rs66976113
Chromosome Location	chr9:85218186-85218187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10435944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139630	0.80[ASN][1000 genomes]
rs11139631	0.80[ASN][1000 genomes]
rs11139637	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11139642	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11139643	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11139645	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11139647	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17085617	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17085618	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66662330	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66818511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85210600-85218400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:85213400-85221000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:85216000-85219600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:85216000-85220600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:85216200-85219600	Weak transcription	Fetal Lung	lung
6	chr9:85216200-85220800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:85216400-85219600	Weak transcription	Fetal Intestine Small	intestine
8	chr9:85216400-85219800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:85216400-85219800	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:85216600-85219600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:85216600-85219600	Weak transcription	Liver	Liver
12	chr9:85216600-85219600	Weak transcription	Fetal Intestine Large	intestine
13	chr9:85216600-85220000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:85216800-85219800	Enhancers	HepG2	liver
15	chr9:85217200-85219600	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:85217200-85221200	Weak transcription	Fetal Heart	heart
17	chr9:85217400-85219600	Weak transcription	Fetal Kidney	kidney
18	chr9:85217400-85219600	Weak transcription	Fetal Stomach	stomach
19	chr9:85218000-85218200	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links