Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10435944	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10867860	0.83[ASN][1000 genomes]
rs11139630	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11139631	0.94[ASN][1000 genomes]
rs11139632	0.93[ASN][1000 genomes]
rs11139633	0.92[ASN][1000 genomes]
rs11139635	0.80[ASN][1000 genomes]
rs11139637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139645	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11139647	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12176641	0.93[ASN][1000 genomes]
rs12176645	0.80[ASN][1000 genomes]
rs17085617	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17085618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4146867	0.93[ASN][1000 genomes]
rs66662330	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66818511	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66976113	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67169967	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7025231	0.82[ASN][1000 genomes]
rs7870337	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11139642	LOC162632	trans	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85199600-85215400	Weak transcription	Pancreas	Pancrea
2	chr9:85204600-85212200	Weak transcription	Fetal Kidney	kidney
3	chr9:85209000-85213200	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:85210000-85212000	Enhancers	HepG2	liver
5	chr9:85210400-85210600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:85210400-85210800	Enhancers	Fetal Lung	lung
7	chr9:85210400-85211000	Enhancers	Fetal Stomach	stomach
8	chr9:85210400-85211600	Weak transcription	Fetal Intestine Small	intestine

Quick Search: