Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10867860	0.80[ASN][1000 genomes]
rs11139609	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11139610	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11139611	0.86[EUR][1000 genomes]
rs11139614	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11139615	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11139630	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11139632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11139633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11139635	0.83[ASN][1000 genomes]
rs11139637	0.92[ASN][1000 genomes]
rs11139642	0.94[ASN][1000 genomes]
rs11139643	0.91[ASN][1000 genomes]
rs11139645	0.80[ASN][1000 genomes]
rs11139647	0.81[ASN][1000 genomes]
rs12176641	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12176645	0.83[ASN][1000 genomes]
rs12238509	0.88[EUR][1000 genomes]
rs17085617	0.94[ASN][1000 genomes]
rs17085618	0.94[ASN][1000 genomes]
rs4146867	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66976113	0.80[ASN][1000 genomes]
rs67169967	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72737425	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7870337	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85195200-85198200	Enhancers	Fetal Intestine Small	intestine
2	chr9:85195200-85205000	Enhancers	Fetal Intestine Large	intestine
3	chr9:85195600-85200000	Enhancers	Liver	Liver
4	chr9:85195600-85205200	Enhancers	HepG2	liver
5	chr9:85196400-85197400	Weak transcription	Stomach Mucosa	stomach
6	chr9:85197000-85197400	Enhancers	Pancreas	Pancrea
7	chr9:85197000-85197600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr9:85197000-85197600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:85197000-85197600	Enhancers	Fetal Stomach	stomach
10	chr9:85197200-85198600	Weak transcription	Lung	lung

Quick Search: