Variant report

Variant	rs11139609
Chromosome Location	chr9:85175959-85175960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11139608	0.83[AMR][1000 genomes]
rs11139610	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139611	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11139614	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139630	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11139631	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11139632	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11139633	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12176641	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12238509	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4146867	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67169967	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72737425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85170000-85176800	Enhancers	HepG2	liver
2	chr9:85170800-85177000	Enhancers	Stomach Mucosa	stomach
3	chr9:85172000-85176000	Enhancers	Liver	Liver
4	chr9:85174600-85178400	Weak transcription	Fetal Kidney	kidney
5	chr9:85175000-85176000	Enhancers	Primary hematopoietic stem cells	blood
6	chr9:85175000-85176000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr9:85175000-85180200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:85175800-85178400	Weak transcription	Fetal Lung	lung
9	chr9:85175800-85178600	Weak transcription	Fetal Intestine Small	intestine
10	chr9:85175800-85178600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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