Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10867860	0.81[ASN][1000 genomes]
rs11139609	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11139610	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11139611	0.86[EUR][1000 genomes]
rs11139614	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11139615	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11139630	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11139631	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11139632	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139633	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11139635	0.84[ASN][1000 genomes]
rs11139637	0.91[ASN][1000 genomes]
rs11139642	0.93[ASN][1000 genomes]
rs11139643	0.90[ASN][1000 genomes]
rs12176641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12176645	0.84[ASN][1000 genomes]
rs12238509	0.88[EUR][1000 genomes]
rs17085617	0.95[ASN][1000 genomes]
rs17085618	0.92[ASN][1000 genomes]
rs67169967	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72737425	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7870337	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831641	chr9:85145561-85309589	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85195200-85205000	Enhancers	Fetal Intestine Large	intestine
2	chr9:85195600-85205200	Enhancers	HepG2	liver
3	chr9:85197800-85202000	Weak transcription	Stomach Mucosa	stomach
4	chr9:85198600-85200200	Enhancers	Lung	lung
5	chr9:85198600-85200400	Enhancers	Fetal Intestine Small	intestine
6	chr9:85198800-85202800	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:85199400-85203200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:85199600-85201200	Weak transcription	Fetal Stomach	stomach
9	chr9:85199600-85215400	Weak transcription	Pancreas	Pancrea
10	chr9:85200000-85203800	Weak transcription	Liver	Liver
11	chr9:85200000-85203800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr9:85200000-85208400	Weak transcription	Fetal Muscle Leg	muscle

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