Variant report

Variant	rs10439186
Chromosome Location	chr2:142630029-142630030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10166169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10167034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10167533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10172953	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10176459	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10178875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10179633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10181557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10192543	1.00[CHB][hapmap]
rs10193124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10203168	1.00[CHB][hapmap]
rs10203777	1.00[CHB][hapmap]
rs10439174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10439187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385783	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs13387675	1.00[CHB][hapmap]
rs13389827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13400934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1435596	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17816590	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17817209	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2053172	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2053173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2053174	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2053175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7557907	1.00[CHB][hapmap]
rs7558288	1.00[CHB][hapmap]
rs7598735	1.00[CHB][hapmap]
rs7602631	1.00[CHB][hapmap]
rs9287325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142629400-142630200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr2:142629800-142631000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:142630000-142630400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr2:142630000-142631000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:142630000-142631200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:142630000-142631400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:142630000-142631800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links