Variant report

Variant	rs17817209
Chromosome Location	chr2:142611717-142611718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142601107..142603350-chr2:142610818..142614066,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10166169	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10167034	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10167533	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10172953	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10176459	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs10178875	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10179633	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10181557	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10192543	1.00[CHB][hapmap]
rs10193124	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10203168	1.00[CHB][hapmap]
rs10203777	1.00[CHB][hapmap]
rs10439174	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10439185	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10439186	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10439187	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10439188	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10439189	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13385783	1.00[CHB][hapmap]
rs13387675	1.00[CHB][hapmap]
rs13389827	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13400934	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1435596	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs17816590	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs2053172	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2053173	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2053174	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2053175	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7557907	1.00[CHB][hapmap]
rs7558288	1.00[CHB][hapmap]
rs7598735	1.00[CHB][hapmap]
rs7602631	1.00[CHB][hapmap]
rs9287325	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875249	chr2:142527100-142614345	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv875250	chr2:142540240-142614345	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142609000-142613800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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