Variant report
| Variant | rs7558288 |
|---|---|
| Chromosome Location | chr2:142519505-142519506 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:142519003..142520660-chr2:142522253..142524916,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10166169 | 1.00[CHB][hapmap] |
| rs10167034 | 1.00[CHB][hapmap] |
| rs10167533 | 1.00[CHB][hapmap] |
| rs10172953 | 1.00[CHB][hapmap] |
| rs10176459 | 1.00[CHB][hapmap] |
| rs10178875 | 1.00[CHB][hapmap] |
| rs10179633 | 1.00[CHB][hapmap] |
| rs10181557 | 1.00[CHB][hapmap] |
| rs10192543 | 1.00[CHB][hapmap] |
| rs10193124 | 1.00[CHB][hapmap] |
| rs10203168 | 1.00[CHB][hapmap] |
| rs10203777 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs10439174 | 1.00[CHB][hapmap] |
| rs10439186 | 1.00[CHB][hapmap] |
| rs10439187 | 1.00[CHB][hapmap] |
| rs10439188 | 1.00[CHB][hapmap] |
| rs10439189 | 1.00[CHB][hapmap] |
| rs11886854 | 1.00[MEX][hapmap] |
| rs11902528 | 1.00[MEX][hapmap] |
| rs13385783 | 1.00[CHB][hapmap] |
| rs13387675 | 1.00[CHB][hapmap] |
| rs13389827 | 1.00[CHB][hapmap] |
| rs13400934 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs1435596 | 1.00[CHB][hapmap] |
| rs16847516 | 1.00[MEX][hapmap] |
| rs17816590 | 1.00[CHB][hapmap] |
| rs17817209 | 1.00[CHB][hapmap] |
| rs2053172 | 1.00[CHB][hapmap] |
| rs2053173 | 1.00[CHB][hapmap];0.85[CHD][hapmap] |
| rs2053174 | 1.00[CHB][hapmap] |
| rs2053175 | 1.00[CHB][hapmap] |
| rs6429913 | 1.00[MEX][hapmap] |
| rs7557907 | 1.00[CHB][hapmap] |
| rs7558739 | 1.00[MEX][hapmap] |
| rs7589315 | 1.00[MEX][hapmap] |
| rs7597632 | 1.00[MEX][hapmap] |
| rs7598735 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs7601913 | 1.00[MEX][hapmap] |
| rs7602631 | 1.00[CHB][hapmap] |
| rs9287325 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834394 | chr2:142430225-142593264 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv459663 | chr2:142509570-142568465 | Weak transcription Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 4 | nsv583236 | chr2:142509570-142568465 | Weak transcription Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv1004379 | chr2:142514657-142547597 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
