Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11884412	0.85[AMR][1000 genomes]
rs11884442	0.85[AMR][1000 genomes]
rs11886854	1.00[MEX][hapmap]
rs11895886	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11900253	1.00[AMR][1000 genomes]
rs11900370	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11902882	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[AMR][1000 genomes]
rs12691630	1.00[MEX][hapmap]
rs16847516	1.00[MEX][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs1991997	0.80[YRI][hapmap]
rs1991998	0.83[YRI][hapmap]
rs4662555	0.80[YRI][hapmap]
rs73964841	1.00[AMR][1000 genomes]
rs7557232	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7558288	1.00[MEX][hapmap]
rs7561371	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7562049	1.00[AMR][1000 genomes]
rs7589315	1.00[MEX][hapmap]
rs7597632	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs7597980	1.00[AMR][1000 genomes]
rs7601913	0.93[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv875251	chr2:142656200-142701852	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142658200-142658800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:142658400-142659000	Enhancers	HMEC	breast
3	chr2:142658400-142659200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:142658600-142659000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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