Variant report

Variant	rs11902882
Chromosome Location	chr2:142687302-142687303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11884412	0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11884442	0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11895886	1.00[AMR][1000 genomes]
rs11900253	1.00[AMR][1000 genomes]
rs11900370	1.00[AMR][1000 genomes]
rs16847516	1.00[AMR][1000 genomes]
rs16847677	1.00[YRI][hapmap]
rs73964841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7557232	1.00[AMR][1000 genomes]
rs7558739	0.93[ASW][hapmap];0.84[LWK][hapmap];1.00[AMR][1000 genomes]
rs7561371	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs7562049	1.00[AMR][1000 genomes]
rs7597632	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7597980	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7601913	0.87[ASW][hapmap]
rs7609338	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv875251	chr2:142656200-142701852	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1004207	chr2:142684812-142741653	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2762863	chr2:142684812-142771707	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142683000-142688400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:142683400-142688000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:142684200-142687600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:142687000-142687400	Active TSS	NHDF-Ad	bronchial
5	chr2:142687000-142687600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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