Variant report
| Variant | rs7561371 |
|---|---|
| Chromosome Location | chr2:142664727-142664728 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168702 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11884412 | 0.86[YRI][hapmap];0.85[AMR][1000 genomes] |
| rs11884442 | 0.86[YRI][hapmap];0.85[AMR][1000 genomes] |
| rs11895886 | 0.91[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11900253 | 1.00[AMR][1000 genomes] |
| rs11900370 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11902882 | 0.89[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs16847516 | 1.00[AMR][1000 genomes] |
| rs16847677 | 0.90[YRI][hapmap] |
| rs6429931 | 0.89[YRI][hapmap] |
| rs73964841 | 1.00[AMR][1000 genomes] |
| rs7557232 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7558739 | 0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7562049 | 1.00[AMR][1000 genomes] |
| rs7597632 | 0.89[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7597980 | 1.00[AMR][1000 genomes] |
| rs7601913 | 0.85[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv583238 | chr2:142646363-142739121 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv875251 | chr2:142656200-142701852 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
