Variant report
| Variant | rs7601913 |
|---|---|
| Chromosome Location | chr2:142653089-142653090 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11884412 | 0.85[AMR][1000 genomes] |
| rs11884442 | 0.85[AMR][1000 genomes] |
| rs11886854 | 1.00[MEX][hapmap] |
| rs11895886 | 0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11900253 | 1.00[AMR][1000 genomes] |
| rs11900370 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11902882 | 0.87[ASW][hapmap];1.00[AMR][1000 genomes] |
| rs12691630 | 1.00[MEX][hapmap] |
| rs16847516 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs1991997 | 0.83[YRI][hapmap] |
| rs73964841 | 1.00[AMR][1000 genomes] |
| rs7557232 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7558288 | 1.00[MEX][hapmap] |
| rs7558739 | 0.93[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7561371 | 0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7562049 | 1.00[AMR][1000 genomes] |
| rs7589315 | 1.00[MEX][hapmap] |
| rs7597632 | 0.86[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs7597980 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530398 | chr2:142474842-142843839 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009893 | chr2:142585905-142662116 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv583238 | chr2:142646363-142739121 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
