Variant report

Variant	rs11900253
Chromosome Location	chr2:142646957-142646958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11884412	0.85[AMR][1000 genomes]
rs11884442	0.85[AMR][1000 genomes]
rs11895886	1.00[AMR][1000 genomes]
rs11900370	1.00[AMR][1000 genomes]
rs11902882	1.00[AMR][1000 genomes]
rs16847516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73964841	1.00[AMR][1000 genomes]
rs7557232	1.00[AMR][1000 genomes]
rs7558739	1.00[AMR][1000 genomes]
rs7561371	1.00[AMR][1000 genomes]
rs7562049	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7597632	1.00[AMR][1000 genomes]
rs7597980	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv583238	chr2:142646363-142739121	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142640400-142647000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:142645000-142647200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr2:142646000-142647200	Enhancers	Brain Substantia Nigra	brain
4	chr2:142646600-142647400	Enhancers	Brain Angular Gyrus	brain
5	chr2:142646600-142647600	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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