Variant report

Variant	rs10441743
Chromosome Location	chr9:108193883-108193884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10115811	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10115838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10119410	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10119483	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121304	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123783	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125150	0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125368	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441742	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441772	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441773	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441774	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12004028	0.83[AMR][1000 genomes]
rs12336341	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12337845	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12338480	0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340242	0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345255	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12346497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12348967	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349041	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349068	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12353548	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28456113	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28461171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28541347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28613030	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56965223	0.83[AMR][1000 genomes]
rs57430142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57497195	0.83[AMR][1000 genomes]
rs7028140	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7028216	0.85[AMR][1000 genomes]
rs9299388	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108177800-108194200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:108177800-108194200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:108183000-108194000	Weak transcription	Brain Anterior Caudate	brain
4	chr9:108189000-108194000	Weak transcription	Liver	Liver
5	chr9:108192600-108196600	Enhancers	Fetal Intestine Large	intestine
6	chr9:108193400-108195800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr9:108193400-108196600	Enhancers	Fetal Intestine Small	intestine
8	chr9:108193600-108194600	Enhancers	HepG2	liver
9	chr9:108193600-108194800	Enhancers	Brain Substantia Nigra	brain
10	chr9:108193600-108195200	Enhancers	Brain Hippocampus Middle	brain
11	chr9:108193600-108195200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:108193600-108195200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr9:108193600-108195800	Enhancers	Duodenum Mucosa	Duodenum
14	chr9:108193800-108194400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:108193800-108194400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:108193800-108194400	Enhancers	Fetal Muscle Leg	muscle
17	chr9:108193800-108194400	Enhancers	Left Ventricle	heart
18	chr9:108193800-108194400	Enhancers	Lung	lung
19	chr9:108193800-108194600	Weak transcription	Fetal Brain Male	brain
20	chr9:108193800-108194800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:108193800-108195000	Enhancers	Brain Angular Gyrus	brain
22	chr9:108193800-108195000	Genic enhancers	Brain Cingulate Gyrus	brain
23	chr9:108193800-108195000	Enhancers	Brain Inferior Temporal Lobe	brain

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