Variant report

Variant	rs28613030
Chromosome Location	chr9:108204337-108204338
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108203737..108205613-chr9:108208927..108211820,2	K562	blood:

Variant related genes	Relation type
ENSG00000106701	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10115811	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10115838	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10119410	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10119483	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10121304	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10123783	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10125150	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10125368	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10441742	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10441743	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10441771	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10441772	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10441773	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10441774	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12004028	1.00[AMR][1000 genomes]
rs12336341	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12337845	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12338480	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12340242	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12345255	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12346497	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12348967	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12349041	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12349068	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12353548	0.87[AFR][1000 genomes]
rs28456113	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28461171	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28541347	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56965223	1.00[AMR][1000 genomes]
rs57430142	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57497195	1.00[AMR][1000 genomes]
rs7028140	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9299388	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1053973	chr9:108199177-108300186	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108195800-108209800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr9:108197800-108206800	Weak transcription	HepG2	liver
3	chr9:108201000-108207600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:108201000-108209600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr9:108201200-108204600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:108201200-108205000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:108201200-108205600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:108201400-108206200	Weak transcription	HSMM	muscle
9	chr9:108201400-108206600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:108201600-108206200	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:108201600-108209800	Weak transcription	NHLF	lung
12	chr9:108202000-108206200	Weak transcription	NH-A	brain
13	chr9:108202000-108206600	Weak transcription	NHDF-Ad	bronchial
14	chr9:108202200-108206400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:108202400-108206600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:108202600-108206600	Weak transcription	HSMMtube	muscle
17	chr9:108202800-108206200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:108203200-108207400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr9:108203400-108204400	Enhancers	Right Atrium	heart
20	chr9:108203400-108208400	Enhancers	Brain Substantia Nigra	brain
21	chr9:108203600-108204600	Enhancers	Liver	Liver
22	chr9:108203600-108204600	Enhancers	Fetal Brain Male	brain
23	chr9:108203600-108204600	Enhancers	Fetal Heart	heart
24	chr9:108203600-108204800	Enhancers	Brain Hippocampus Middle	brain
25	chr9:108203600-108204800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr9:108203600-108205800	Enhancers	Brain Cingulate Gyrus	brain
27	chr9:108203600-108206000	Enhancers	Psoas Muscle	Psoas
28	chr9:108203600-108207400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr9:108203800-108204400	Enhancers	Brain Angular Gyrus	brain
30	chr9:108203800-108204600	Enhancers	Brain Anterior Caudate	brain
31	chr9:108203800-108205800	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr9:108204000-108204600	Enhancers	Fetal Lung	lung
33	chr9:108204000-108204600	Enhancers	Left Ventricle	heart
34	chr9:108204200-108204600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:108204200-108207400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr9:108204200-108209800	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links