Variant report

Variant	rs28541347
Chromosome Location	chr9:108195332-108195333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108194244..108195984-chr9:108208185..108210815,2	K562	blood:

Variant related genes	Relation type
ENSG00000106701	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10115811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10115838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10119410	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10119483	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10121304	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123783	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125150	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125368	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441742	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10441774	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12004028	0.83[AMR][1000 genomes]
rs12336341	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12337845	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12338480	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340242	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345255	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12346497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12348967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349041	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12353548	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28456113	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28461171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28613030	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56965223	0.83[AMR][1000 genomes]
rs57430142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57497195	0.83[AMR][1000 genomes]
rs7028140	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7028216	0.85[AMR][1000 genomes]
rs9299388	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108192600-108196600	Enhancers	Fetal Intestine Large	intestine
2	chr9:108193400-108195800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr9:108193400-108196600	Enhancers	Fetal Intestine Small	intestine
4	chr9:108193600-108195800	Enhancers	Duodenum Mucosa	Duodenum
5	chr9:108194000-108196600	Enhancers	Liver	Liver
6	chr9:108194400-108200400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:108194400-108200600	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:108194600-108196200	Enhancers	Fetal Brain Male	brain
9	chr9:108194800-108197200	Weak transcription	Brain Substantia Nigra	brain
10	chr9:108194800-108200400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:108194800-108203800	Weak transcription	Brain Anterior Caudate	brain
12	chr9:108195000-108199000	Weak transcription	HSMMtube	muscle
13	chr9:108195000-108200000	Weak transcription	Brain Angular Gyrus	brain
14	chr9:108195000-108200200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:108195000-108200200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:108195000-108200800	Weak transcription	Pancreas	Pancrea
17	chr9:108195200-108196400	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr9:108195200-108197800	Enhancers	HepG2	liver
19	chr9:108195200-108198600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr9:108195200-108198600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr9:108195200-108200400	Weak transcription	Brain Hippocampus Middle	brain
22	chr9:108195200-108200400	Weak transcription	Fetal Kidney	kidney

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