Variant report

Variant	rs10444015
Chromosome Location	chr10:99170682-99170683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99168420..99171279-chr10:99172405..99174703,2	K562	blood:
2	chr10:99165782..99177128-chr10:99179856..99189832,30	MCF-7	breast:
3	chr10:99170419..99173744-chr10:99178891..99183198,3	MCF-7	breast:
4	chr10:99168511..99173804-chr10:99184850..99187816,7	MCF-7	breast:
5	chr10:99166045..99168504-chr10:99170322..99173005,2	K562	blood:
6	chr10:99166892..99169975-chr10:99170359..99172836,3	MCF-7	breast:
7	chr10:99170047..99172632-chr10:99208471..99210539,2	MCF-7	breast:
8	chr10:99167747..99170750-chr10:99204032..99206080,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000171307	Chromatin interaction
ENSG00000224474	Chromatin interaction
ENSG00000171311	Chromatin interaction
ENSG00000171314	Chromatin interaction
ENSG00000200737	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11189106	1.00[AFR][1000 genomes]
rs11189107	1.00[AFR][1000 genomes]
rs11189129	1.00[AFR][1000 genomes]
rs11189141	1.00[AFR][1000 genomes]
rs11189198	1.00[AFR][1000 genomes]
rs41284270	1.00[AFR][1000 genomes]
rs45527941	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467438	chr10:99126249-99173870	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv552024	chr10:99126249-99173870	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv467440	chr10:99134784-99204791	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv552025	chr10:99134784-99204791	Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99161600-99178800	Weak transcription	Fetal Stomach	stomach
2	chr10:99161600-99185200	Weak transcription	Pancreas	Pancrea
3	chr10:99167400-99171200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:99167400-99171200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:99167400-99171200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:99167400-99172400	Weak transcription	Primary T cells from cord blood	blood
7	chr10:99167400-99174000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:99167400-99174800	Weak transcription	NHDF-Ad	bronchial
9	chr10:99167400-99176200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:99167400-99178000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:99167400-99179000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:99167400-99185200	Weak transcription	Fetal Lung	lung
13	chr10:99167400-99185400	Weak transcription	Gastric	stomach
14	chr10:99167600-99170800	Weak transcription	Fetal Heart	heart
15	chr10:99167600-99171000	Weak transcription	NH-A	brain
16	chr10:99167600-99171000	Weak transcription	Osteobl	bone
17	chr10:99167600-99171200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:99167600-99171200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:99167600-99171200	Weak transcription	Fetal Kidney	kidney
20	chr10:99167600-99172400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:99167600-99172400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:99167600-99172400	Weak transcription	GM12878-XiMat	blood
23	chr10:99167600-99172600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:99167600-99172600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr10:99167600-99172600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr10:99167600-99172600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:99167600-99172600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:99167600-99172600	Weak transcription	Fetal Thymus	thymus
29	chr10:99167600-99172800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr10:99167600-99172800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:99167600-99172800	Weak transcription	Thymus	Thymus
32	chr10:99167600-99172800	Weak transcription	HUVEC	blood vessel
33	chr10:99167600-99173400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:99167600-99173400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:99167600-99173400	Weak transcription	Esophagus	oesophagus
36	chr10:99167600-99173600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:99167600-99173600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:99167600-99174800	Weak transcription	Brain Anterior Caudate	brain
39	chr10:99167600-99177800	Weak transcription	Fetal Intestine Large	intestine
40	chr10:99167600-99178000	Weak transcription	Fetal Muscle Leg	muscle
41	chr10:99167600-99178400	Weak transcription	Right Atrium	heart
42	chr10:99167600-99185200	Weak transcription	Fetal Intestine Small	intestine
43	chr10:99167600-99185200	Weak transcription	Left Ventricle	heart
44	chr10:99167800-99172400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr10:99167800-99172600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr10:99167800-99172600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr10:99167800-99173400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:99167800-99178000	Weak transcription	A549	lung
49	chr10:99168000-99171200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:99168000-99173400	Weak transcription	Primary hematopoietic stem cells	blood

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