Variant report

Variant	rs11189198
Chromosome Location	chr10:99155177-99155178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10444015	1.00[AFR][1000 genomes]
rs10509713	0.96[EUR][1000 genomes]
rs11189106	1.00[AFR][1000 genomes]
rs11189107	1.00[AFR][1000 genomes]
rs11189129	1.00[AFR][1000 genomes]
rs11189136	0.85[EUR][1000 genomes]
rs11189140	0.92[EUR][1000 genomes]
rs11189141	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11189143	0.92[EUR][1000 genomes]
rs11189145	0.92[EUR][1000 genomes]
rs11189146	0.92[EUR][1000 genomes]
rs11189148	0.92[EUR][1000 genomes]
rs11189149	0.92[EUR][1000 genomes]
rs11189158	0.96[EUR][1000 genomes]
rs11189162	0.96[EUR][1000 genomes]
rs11189166	0.96[EUR][1000 genomes]
rs11189170	0.96[EUR][1000 genomes]
rs11189190	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12355279	0.92[EUR][1000 genomes]
rs12355311	0.88[EUR][1000 genomes]
rs12356909	0.92[EUR][1000 genomes]
rs12358520	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12359467	0.83[EUR][1000 genomes]
rs1810982	0.96[EUR][1000 genomes]
rs1970191	0.92[EUR][1000 genomes]
rs1970454	0.96[EUR][1000 genomes]
rs41284270	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs41300219	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45527941	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs884450	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467437	chr10:99115683-99167436	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv552023	chr10:99115683-99167436	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467438	chr10:99126249-99173870	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv552024	chr10:99126249-99173870	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv467440	chr10:99134784-99204791	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv552025	chr10:99134784-99204791	Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99109000-99157800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:99109600-99157800	Strong transcription	Fetal Stomach	stomach
3	chr10:99113400-99158600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:99113800-99158800	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:99113800-99159800	Weak transcription	Fetal Brain Male	brain
6	chr10:99114600-99159000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:99115400-99157600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:99115600-99159800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:99115800-99157800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:99115800-99157800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:99115800-99158600	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr10:99118000-99159800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:99121000-99157600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:99121000-99159600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr10:99121200-99159600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:99122400-99158800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:99122800-99159200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:99127000-99157600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:99127400-99157600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:99127800-99157600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:99128200-99156600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:99128400-99159800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:99129600-99159200	Strong transcription	Osteobl	bone
24	chr10:99130800-99159600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:99131600-99158400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr10:99132000-99157600	Strong transcription	Fetal Muscle Leg	muscle
27	chr10:99136400-99156600	Strong transcription	Brain Anterior Caudate	brain
28	chr10:99136400-99157400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:99136400-99157800	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:99141000-99159800	Weak transcription	Stomach Mucosa	stomach
31	chr10:99142200-99159200	Strong transcription	Fetal Intestine Small	intestine
32	chr10:99142600-99156600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:99142800-99157600	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr10:99143000-99156400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:99143000-99157000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:99143000-99157200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:99143000-99157800	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:99143200-99157600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:99144800-99157600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:99144800-99157600	Strong transcription	Fetal Brain Female	brain
41	chr10:99145000-99156800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr10:99145200-99157000	Strong transcription	Dnd41	blood
43	chr10:99146600-99158800	Strong transcription	Liver	Liver
44	chr10:99146800-99157600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr10:99147200-99156400	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr10:99147200-99156600	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr10:99147200-99156800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr10:99147600-99157000	Strong transcription	Primary B cells from cord blood	blood
49	chr10:99147600-99157600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:99147800-99156200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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