Variant report

Variant	rs11189190
Chromosome Location	chr10:99147436-99147437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99145838..99147761-chr10:99158745..99160617,2	K562	blood:
2	chr10:99145788..99148369-chr10:99203944..99206284,2	K562	blood:

Variant related genes	Relation type
ENSG00000171307	Chromatin interaction
ENSG00000171311	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10509713	0.96[EUR][1000 genomes]
rs11189136	0.85[EUR][1000 genomes]
rs11189140	0.92[EUR][1000 genomes]
rs11189141	0.92[EUR][1000 genomes]
rs11189143	0.92[EUR][1000 genomes]
rs11189145	0.92[EUR][1000 genomes]
rs11189146	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11189148	0.92[EUR][1000 genomes]
rs11189149	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11189158	0.96[EUR][1000 genomes]
rs11189162	0.96[EUR][1000 genomes]
rs11189166	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11189170	0.96[EUR][1000 genomes]
rs11189198	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189199	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12355279	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12355311	0.88[EUR][1000 genomes]
rs12356909	0.92[EUR][1000 genomes]
rs12358520	1.00[EUR][1000 genomes]
rs12359467	0.83[EUR][1000 genomes]
rs1810982	0.96[EUR][1000 genomes]
rs1970191	0.92[EUR][1000 genomes]
rs1970454	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs41284270	0.96[EUR][1000 genomes]
rs41300219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45527941	0.96[EUR][1000 genomes]
rs884450	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467437	chr10:99115683-99167436	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv552023	chr10:99115683-99167436	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467438	chr10:99126249-99173870	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv552024	chr10:99126249-99173870	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv467440	chr10:99134784-99204791	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv552025	chr10:99134784-99204791	Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99109000-99157800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:99109600-99157800	Strong transcription	Fetal Stomach	stomach
3	chr10:99113400-99158600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:99113800-99158800	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:99113800-99159800	Weak transcription	Fetal Brain Male	brain
6	chr10:99114600-99159000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:99115400-99157600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:99115600-99159800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:99115800-99157800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:99115800-99157800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:99115800-99158600	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr10:99118000-99159800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:99121000-99157600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:99121000-99159600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr10:99121200-99159600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:99122400-99158800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:99122800-99159200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:99125800-99150400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr10:99127000-99157600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr10:99127400-99157600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:99127800-99157600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:99128200-99156600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:99128400-99151000	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:99128400-99159800	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:99129600-99159200	Strong transcription	Osteobl	bone
26	chr10:99130800-99159600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:99131600-99158400	Strong transcription	Fetal Muscle Trunk	muscle
28	chr10:99132000-99157600	Strong transcription	Fetal Muscle Leg	muscle
29	chr10:99132200-99147800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:99132200-99149800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:99132600-99147600	Weak transcription	NHDF-Ad	bronchial
32	chr10:99132600-99149200	Weak transcription	Fetal Kidney	kidney
33	chr10:99133800-99147800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:99134200-99147800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr10:99136200-99153800	Strong transcription	Adipose Nuclei	Adipose
36	chr10:99136400-99152000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:99136400-99156600	Strong transcription	Brain Anterior Caudate	brain
38	chr10:99136400-99157400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:99136400-99157800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:99137000-99147800	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr10:99137200-99147800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr10:99137600-99153600	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr10:99137800-99150600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:99138200-99147800	Weak transcription	K562	blood
45	chr10:99139200-99147800	Weak transcription	HUVEC	blood vessel
46	chr10:99140000-99147600	Weak transcription	HSMM	muscle
47	chr10:99141000-99159800	Weak transcription	Stomach Mucosa	stomach
48	chr10:99141400-99147800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:99141400-99147800	Weak transcription	Brain Substantia Nigra	brain
50	chr10:99141600-99147800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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