Variant report

Variant	rs11189140
Chromosome Location	chr10:99100376-99100377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99091827..99095010-chr10:99100053..99102493,4	K562	blood:
2	chr10:99092885..99094925-chr10:99098939..99101611,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181274	Chromatin interaction
ENSG00000225850	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10509713	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189064	0.87[AMR][1000 genomes]
rs11189065	0.87[AMR][1000 genomes]
rs11189066	0.87[AMR][1000 genomes]
rs11189067	0.87[AMR][1000 genomes]
rs11189072	0.87[AMR][1000 genomes]
rs11189073	0.87[AMR][1000 genomes]
rs11189074	0.87[AMR][1000 genomes]
rs11189076	0.87[AMR][1000 genomes]
rs11189077	0.87[AMR][1000 genomes]
rs11189078	0.87[AMR][1000 genomes]
rs11189080	0.87[AMR][1000 genomes]
rs11189081	0.87[AMR][1000 genomes]
rs11189084	0.87[AMR][1000 genomes]
rs11189086	0.87[AMR][1000 genomes]
rs11189087	0.87[AMR][1000 genomes]
rs11189090	0.82[AMR][1000 genomes]
rs11189092	0.82[AMR][1000 genomes]
rs11189093	0.87[AMR][1000 genomes]
rs11189094	0.87[AMR][1000 genomes]
rs11189096	0.87[AMR][1000 genomes]
rs11189097	0.87[AMR][1000 genomes]
rs11189098	0.87[AMR][1000 genomes]
rs11189106	0.87[AMR][1000 genomes]
rs11189107	0.87[AMR][1000 genomes]
rs11189109	0.82[AMR][1000 genomes]
rs11189117	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11189118	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11189125	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11189129	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11189136	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11189141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189145	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189146	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189148	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189149	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189158	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189162	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189166	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189170	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189190	0.92[EUR][1000 genomes]
rs11189198	0.92[EUR][1000 genomes]
rs11189199	0.92[EUR][1000 genomes]
rs12355279	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12355311	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12355523	0.87[AMR][1000 genomes]
rs12355526	0.87[AMR][1000 genomes]
rs12356559	0.87[AMR][1000 genomes]
rs12356626	0.87[AMR][1000 genomes]
rs12356648	0.87[AMR][1000 genomes]
rs12356909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12358104	0.87[AMR][1000 genomes]
rs12358257	0.87[AMR][1000 genomes]
rs12358267	0.87[AMR][1000 genomes]
rs12358452	0.87[AMR][1000 genomes]
rs12358520	0.92[EUR][1000 genomes]
rs12358777	0.87[AMR][1000 genomes]
rs12359143	0.87[AMR][1000 genomes]
rs12359467	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12359643	0.87[AMR][1000 genomes]
rs12359654	0.87[AMR][1000 genomes]
rs12360528	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1414742	0.87[AMR][1000 genomes]
rs1810982	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1970191	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1970454	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41284270	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41300219	0.92[EUR][1000 genomes]
rs45527941	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7917149	0.82[AMR][1000 genomes]
rs884450	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9645543	0.87[AMR][1000 genomes]
rs9645559	0.87[AMR][1000 genomes]
rs9645560	0.87[AMR][1000 genomes]
rs9645561	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv825534	chr10:99081505-99115599	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99095200-99109400	Weak transcription	HSMMtube	muscle
2	chr10:99095200-99115200	Weak transcription	Gastric	stomach
3	chr10:99095400-99109400	Weak transcription	Liver	Liver
4	chr10:99095400-99115600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:99095400-99115600	Weak transcription	Left Ventricle	heart
6	chr10:99095400-99115600	Weak transcription	Right Ventricle	heart
7	chr10:99095600-99101800	Weak transcription	Pancreas	Pancrea
8	chr10:99097200-99104200	Weak transcription	K562	blood
9	chr10:99097400-99109600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:99097400-99115200	Weak transcription	A549	lung
11	chr10:99097400-99116000	Weak transcription	Hela-S3	cervix
12	chr10:99097600-99109400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:99097600-99109400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:99097600-99109600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:99097600-99115200	Weak transcription	NHEK	skin
16	chr10:99097600-99115800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:99098200-99101400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:99098200-99108800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:99098200-99116200	Weak transcription	Brain Angular Gyrus	brain
20	chr10:99098400-99101600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr10:99098400-99109200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr10:99098400-99109400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:99098400-99115200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:99098600-99101800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:99098600-99114600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr10:99098600-99115400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:99099200-99101800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:99099200-99109600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:99099400-99101800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:99099400-99113600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr10:99099400-99115600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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