Variant report

Variant	rs11189162
Chromosome Location	chr10:99119641-99119642
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99086397..99088974-chr10:99118500..99121306,2	K562	blood:
2	chr10:99115003..99117234-chr10:99118268..99120611,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10509713	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189039	0.86[AMR][1000 genomes]
rs11189041	0.86[AMR][1000 genomes]
rs11189064	0.87[AMR][1000 genomes]
rs11189065	0.87[AMR][1000 genomes]
rs11189066	0.87[AMR][1000 genomes]
rs11189067	0.87[AMR][1000 genomes]
rs11189072	0.87[AMR][1000 genomes]
rs11189073	0.87[AMR][1000 genomes]
rs11189074	0.87[AMR][1000 genomes]
rs11189076	0.87[AMR][1000 genomes]
rs11189077	0.87[AMR][1000 genomes]
rs11189078	0.87[AMR][1000 genomes]
rs11189080	0.87[AMR][1000 genomes]
rs11189081	0.87[AMR][1000 genomes]
rs11189084	0.87[AMR][1000 genomes]
rs11189086	0.87[AMR][1000 genomes]
rs11189087	0.87[AMR][1000 genomes]
rs11189090	0.82[AMR][1000 genomes]
rs11189092	0.82[AMR][1000 genomes]
rs11189093	0.87[AMR][1000 genomes]
rs11189094	0.87[AMR][1000 genomes]
rs11189096	0.87[AMR][1000 genomes]
rs11189097	0.87[AMR][1000 genomes]
rs11189098	0.87[AMR][1000 genomes]
rs11189106	0.87[AMR][1000 genomes]
rs11189107	0.87[AMR][1000 genomes]
rs11189109	0.82[AMR][1000 genomes]
rs11189117	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11189118	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11189125	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11189129	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11189136	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11189140	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189141	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189143	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189145	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189146	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189148	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189149	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189158	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189166	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189170	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11189190	0.96[EUR][1000 genomes]
rs11189198	0.96[EUR][1000 genomes]
rs11189199	0.96[EUR][1000 genomes]
rs12355279	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12355311	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12355523	0.87[AMR][1000 genomes]
rs12355526	0.87[AMR][1000 genomes]
rs12356559	0.87[AMR][1000 genomes]
rs12356626	0.87[AMR][1000 genomes]
rs12356648	0.87[AMR][1000 genomes]
rs12356909	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12358104	0.87[AMR][1000 genomes]
rs12358257	0.87[AMR][1000 genomes]
rs12358267	0.87[AMR][1000 genomes]
rs12358452	0.87[AMR][1000 genomes]
rs12358520	0.96[EUR][1000 genomes]
rs12358777	0.87[AMR][1000 genomes]
rs12359143	0.87[AMR][1000 genomes]
rs12359467	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12359643	0.87[AMR][1000 genomes]
rs12359654	0.87[AMR][1000 genomes]
rs12360528	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1414742	0.87[AMR][1000 genomes]
rs1810982	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1970191	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1970454	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41284270	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41300219	0.96[EUR][1000 genomes]
rs45527941	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917149	0.82[AMR][1000 genomes]
rs884450	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9645543	0.87[AMR][1000 genomes]
rs9645559	0.87[AMR][1000 genomes]
rs9645560	0.87[AMR][1000 genomes]
rs9645561	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv467437	chr10:99115683-99167436	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv552023	chr10:99115683-99167436	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99107000-99131800	Weak transcription	Fetal Kidney	kidney
2	chr10:99107200-99129200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:99109000-99157800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:99109400-99120400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:99109600-99120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:99109600-99157800	Strong transcription	Fetal Stomach	stomach
7	chr10:99110600-99132800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:99110800-99139800	Weak transcription	Stomach Mucosa	stomach
9	chr10:99111200-99121600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:99111600-99141800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:99113200-99135400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:99113400-99158600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:99113800-99138800	Strong transcription	Fetal Intestine Small	intestine
14	chr10:99113800-99158800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:99113800-99159800	Weak transcription	Fetal Brain Male	brain
16	chr10:99114400-99135000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:99114600-99159000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:99115200-99120600	Strong transcription	NHEK	skin
19	chr10:99115200-99120800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:99115200-99127000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:99115200-99133800	Strong transcription	A549	lung
22	chr10:99115200-99134200	Strong transcription	Gastric	stomach
23	chr10:99115200-99136000	Strong transcription	Fetal Brain Female	brain
24	chr10:99115200-99136800	Strong transcription	Dnd41	blood
25	chr10:99115200-99145800	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr10:99115200-99146800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:99115400-99119800	Strong transcription	Primary B cells from peripheral blood	blood
28	chr10:99115400-99119800	Strong transcription	NH-A	brain
29	chr10:99115400-99121200	Strong transcription	HepG2	liver
30	chr10:99115400-99121400	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr10:99115400-99134200	Strong transcription	Pancreas	Pancrea
32	chr10:99115400-99157600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:99115600-99120400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:99115600-99120600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr10:99115600-99120800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:99115600-99120800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:99115600-99127000	Strong transcription	Ovary	ovary
38	chr10:99115600-99127600	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:99115600-99133800	Genic enhancers	Primary monocytes fromperipheralblood	blood
40	chr10:99115600-99134000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
41	chr10:99115600-99141600	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:99115600-99159800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr10:99115800-99125200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
44	chr10:99115800-99157800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:99115800-99157800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:99115800-99158600	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr10:99116000-99120400	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:99116000-99120600	Strong transcription	Brain Hippocampus Middle	brain
49	chr10:99116000-99120800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:99116000-99134000	Strong transcription	Brain Germinal Matrix	brain

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