Variant report

Variant	rs10444284
Chromosome Location	chr11:45162922-45162923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45156473..45158186-chr11:45161374..45164148,2	K562	blood:
2	chr11:45153382..45155390-chr11:45160879..45163088,3	K562	blood:
3	chr11:45161924..45164749-chr11:45165739..45167752,2	MCF-7	breast:
4	chr11:45161325..45163624-chr11:45203172..45205696,2	K562	blood:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10742739	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10769119	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10769120	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1077983	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10838413	0.91[EUR][1000 genomes]
rs10838415	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10838416	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10838418	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10838423	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11038299	0.91[EUR][1000 genomes]
rs11038300	0.90[EUR][1000 genomes]
rs11038304	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11038308	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11038316	0.89[EUR][1000 genomes]
rs11038317	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11038319	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11038331	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11038332	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11038333	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11038334	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1116961	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1487718	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1487721	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1586465	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2278606	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4282971	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61585701	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs754839	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7937556	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825852	chr11:45141386-45228580	Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv541025	chr11:45154352-45193352	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45162400-45163400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr11:45162800-45163600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:45162800-45163600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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