Variant report

Variant	rs10838423
Chromosome Location	chr11:45153759-45153760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45153527..45160380-chr11:45165355..45169670,10	MCF-7	breast:
2	chr11:45153382..45155390-chr11:45160879..45163088,3	K562	blood:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10444284	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10742739	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769119	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769120	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1077983	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10838413	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838415	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838416	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838417	0.99[ASN][1000 genomes]
rs10838418	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038299	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11038300	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11038304	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038308	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038316	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038317	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038319	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038331	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11038332	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11038333	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11038334	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1116961	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487718	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1487721	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1586465	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278606	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4282971	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61585701	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs754839	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7937556	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825852	chr11:45141386-45228580	Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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