Variant report

Variant	rs10447236
Chromosome Location	chr5:115787223-115787224
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12186896	0.88[EUR][1000 genomes]
rs2288476	0.91[CEU][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs26590	0.83[AMR][1000 genomes]
rs33065	0.81[AMR][1000 genomes]
rs33068	0.81[AMR][1000 genomes]
rs3984967	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72810791	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72810792	0.92[EUR][1000 genomes]
rs72810793	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs728530	0.90[CEU][hapmap]
rs7707574	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733156	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs888825	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9327003	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
2	chr5:115778000-115790000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr5:115778200-115787600	Weak transcription	HMEC	breast
4	chr5:115778200-115787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:115778400-115788800	Weak transcription	HSMMtube	muscle
6	chr5:115779000-115788600	Weak transcription	Fetal Heart	heart
7	chr5:115779000-115789800	Strong transcription	Placenta	Placenta
8	chr5:115779200-115788400	Weak transcription	Right Atrium	heart
9	chr5:115780200-115787400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:115780600-115789400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:115781400-115789600	Weak transcription	Primary B cells from cord blood	blood
12	chr5:115782000-115789600	Weak transcription	Fetal Brain Male	brain
13	chr5:115782200-115798200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:115782600-115788600	Weak transcription	Psoas Muscle	Psoas
15	chr5:115782600-115789800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr5:115782800-115789200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr5:115783000-115789800	Weak transcription	Fetal Thymus	thymus
18	chr5:115783200-115788200	Weak transcription	Brain Angular Gyrus	brain
19	chr5:115783400-115788600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:115783400-115789800	Weak transcription	Thymus	Thymus
21	chr5:115783400-115790200	Weak transcription	Brain Germinal Matrix	brain
22	chr5:115783400-115790200	Weak transcription	Right Ventricle	heart
23	chr5:115783600-115787800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr5:115783600-115788600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:115783600-115788600	Weak transcription	Fetal Kidney	kidney
26	chr5:115783600-115788600	Weak transcription	Lung	lung
27	chr5:115783600-115788800	Weak transcription	Brain Anterior Caudate	brain
28	chr5:115783600-115789200	Weak transcription	Colon Smooth Muscle	Colon
29	chr5:115783600-115789600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:115783600-115789600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr5:115783600-115789800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr5:115783600-115789800	Weak transcription	Fetal Lung	lung
33	chr5:115783600-115790000	Weak transcription	Aorta	Aorta
34	chr5:115783600-115790000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr5:115783600-115790200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr5:115783600-115790400	Enhancers	HepG2	liver
37	chr5:115783600-115802200	Weak transcription	Colonic Mucosa	Colon
38	chr5:115783600-115802200	Weak transcription	Pancreas	Pancrea
39	chr5:115783600-115803400	Weak transcription	Esophagus	oesophagus
40	chr5:115783600-115813000	Weak transcription	Spleen	Spleen
41	chr5:115783600-115813200	Weak transcription	Gastric	stomach
42	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr5:115783800-115789600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr5:115783800-115789800	Weak transcription	Adipose Nuclei	Adipose
45	chr5:115783800-115789800	Weak transcription	Ovary	ovary
46	chr5:115783800-115790000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr5:115783800-115803200	Weak transcription	Liver	Liver
48	chr5:115784000-115788000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr5:115784000-115788400	Weak transcription	Fetal Stomach	stomach
50	chr5:115784000-115791200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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