Variant report

Variant	rs7707574
Chromosome Location	chr5:115786820-115786821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:115786767-115787170	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr5:115786444-115787167	H1-hESC	embryonic stem cell:	n/a	n/a
3	SPI1	chr5:115786748-115787205	HL-60	blood:	n/a	n/a
4	ZNF143	chr5:115786703-115786952	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
SEMA6A	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10447236	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12186896	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2288476	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs26590	0.81[AMR][1000 genomes]
rs33065	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs33068	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3984967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72810791	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72810792	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72810793	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7733156	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs888825	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9327003	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
2	chr5:115778000-115790000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr5:115778200-115787600	Weak transcription	HMEC	breast
4	chr5:115778200-115787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:115778400-115788800	Weak transcription	HSMMtube	muscle
6	chr5:115779000-115788600	Weak transcription	Fetal Heart	heart
7	chr5:115779000-115789800	Strong transcription	Placenta	Placenta
8	chr5:115779200-115788400	Weak transcription	Right Atrium	heart
9	chr5:115780200-115787400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:115780600-115789400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:115781400-115789600	Weak transcription	Primary B cells from cord blood	blood
12	chr5:115782000-115789600	Weak transcription	Fetal Brain Male	brain
13	chr5:115782200-115798200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:115782600-115787200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:115782600-115788600	Weak transcription	Psoas Muscle	Psoas
16	chr5:115782600-115789800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr5:115782800-115789200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:115783000-115789800	Weak transcription	Fetal Thymus	thymus
19	chr5:115783200-115788200	Weak transcription	Brain Angular Gyrus	brain
20	chr5:115783400-115787200	Strong transcription	Fetal Intestine Large	intestine
21	chr5:115783400-115788600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:115783400-115789800	Weak transcription	Thymus	Thymus
23	chr5:115783400-115790200	Weak transcription	Brain Germinal Matrix	brain
24	chr5:115783400-115790200	Weak transcription	Right Ventricle	heart
25	chr5:115783600-115787800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr5:115783600-115788600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:115783600-115788600	Weak transcription	Fetal Kidney	kidney
28	chr5:115783600-115788600	Weak transcription	Lung	lung
29	chr5:115783600-115788800	Weak transcription	Brain Anterior Caudate	brain
30	chr5:115783600-115789200	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:115783600-115789600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr5:115783600-115789600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr5:115783600-115789800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr5:115783600-115789800	Weak transcription	Fetal Lung	lung
35	chr5:115783600-115790000	Weak transcription	Aorta	Aorta
36	chr5:115783600-115790000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr5:115783600-115790200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr5:115783600-115790400	Enhancers	HepG2	liver
39	chr5:115783600-115802200	Weak transcription	Colonic Mucosa	Colon
40	chr5:115783600-115802200	Weak transcription	Pancreas	Pancrea
41	chr5:115783600-115803400	Weak transcription	Esophagus	oesophagus
42	chr5:115783600-115813000	Weak transcription	Spleen	Spleen
43	chr5:115783600-115813200	Weak transcription	Gastric	stomach
44	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr5:115783800-115787000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:115783800-115789600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr5:115783800-115789800	Weak transcription	Adipose Nuclei	Adipose
48	chr5:115783800-115789800	Weak transcription	Ovary	ovary
49	chr5:115783800-115790000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr5:115783800-115803200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links