Variant report

Variant	rs9327003
Chromosome Location	chr5:115785697-115785698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10447236	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12186896	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2288476	0.91[CEU][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs26590	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs33065	0.82[AFR][1000 genomes]
rs33068	0.82[AFR][1000 genomes]
rs3984967	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72810791	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72810792	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72810793	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs728530	0.90[CEU][hapmap]
rs7707574	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7733156	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs888825	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
2	chr5:115776600-115786600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:115778000-115790000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr5:115778200-115785800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr5:115778200-115787600	Weak transcription	HMEC	breast
6	chr5:115778200-115787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:115778400-115788800	Weak transcription	HSMMtube	muscle
8	chr5:115779000-115788600	Weak transcription	Fetal Heart	heart
9	chr5:115779000-115789800	Strong transcription	Placenta	Placenta
10	chr5:115779200-115788400	Weak transcription	Right Atrium	heart
11	chr5:115780200-115787400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:115780400-115785800	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr5:115780600-115789400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:115781400-115789600	Weak transcription	Primary B cells from cord blood	blood
15	chr5:115782000-115789600	Weak transcription	Fetal Brain Male	brain
16	chr5:115782200-115798200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr5:115782400-115786600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr5:115782600-115787200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:115782600-115788600	Weak transcription	Psoas Muscle	Psoas
20	chr5:115782600-115789800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr5:115782800-115789200	Weak transcription	Primary B cells from peripheral blood	blood
22	chr5:115783000-115789800	Weak transcription	Fetal Thymus	thymus
23	chr5:115783200-115788200	Weak transcription	Brain Angular Gyrus	brain
24	chr5:115783400-115787200	Strong transcription	Fetal Intestine Large	intestine
25	chr5:115783400-115788600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:115783400-115789800	Weak transcription	Thymus	Thymus
27	chr5:115783400-115790200	Weak transcription	Brain Germinal Matrix	brain
28	chr5:115783400-115790200	Weak transcription	Right Ventricle	heart
29	chr5:115783600-115787800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr5:115783600-115788600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:115783600-115788600	Weak transcription	Fetal Kidney	kidney
32	chr5:115783600-115788600	Weak transcription	Lung	lung
33	chr5:115783600-115788800	Weak transcription	Brain Anterior Caudate	brain
34	chr5:115783600-115789200	Weak transcription	Colon Smooth Muscle	Colon
35	chr5:115783600-115789600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr5:115783600-115789600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr5:115783600-115789800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr5:115783600-115789800	Weak transcription	Fetal Lung	lung
39	chr5:115783600-115790000	Weak transcription	Aorta	Aorta
40	chr5:115783600-115790000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr5:115783600-115790200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr5:115783600-115790400	Enhancers	HepG2	liver
43	chr5:115783600-115802200	Weak transcription	Colonic Mucosa	Colon
44	chr5:115783600-115802200	Weak transcription	Pancreas	Pancrea
45	chr5:115783600-115803400	Weak transcription	Esophagus	oesophagus
46	chr5:115783600-115813000	Weak transcription	Spleen	Spleen
47	chr5:115783600-115813200	Weak transcription	Gastric	stomach
48	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr5:115783800-115787000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr5:115783800-115789600	Weak transcription	Stomach Smooth Muscle	stomach

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