Variant report

Variant	rs10448310
Chromosome Location	chr9:93556174-93556175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10993693	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12350798	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1319677	0.86[CHB][hapmap];0.85[CHD][hapmap];0.81[ASN][1000 genomes]
rs1333630	0.87[CHB][hapmap]
rs1333634	0.80[ASN][1000 genomes]
rs1333635	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs1333637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs188313	0.96[ASN][1000 genomes]
rs2562396	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs2562397	0.86[ASN][1000 genomes]
rs2774260	0.80[ASN][1000 genomes]
rs2780701	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs290266	0.95[ASN][1000 genomes]
rs290268	0.96[ASN][1000 genomes]
rs290271	0.95[ASN][1000 genomes]
rs290274	0.96[ASN][1000 genomes]
rs290276	0.95[ASN][1000 genomes]
rs290987	0.87[ASN][1000 genomes]
rs290988	0.87[ASN][1000 genomes]
rs290989	0.87[ASN][1000 genomes]
rs290990	0.95[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs290991	0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs290993	0.87[ASN][1000 genomes]
rs290994	0.87[ASN][1000 genomes]
rs290997	0.87[ASN][1000 genomes]
rs291006	0.95[ASN][1000 genomes]
rs772407	0.87[ASN][1000 genomes]
rs7856021	0.87[CHB][hapmap]
rs914925	0.87[CHB][hapmap]
rs94626	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv893567	chr9:93519280-93609668	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv893569	chr9:93552550-93587089	Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10448310	TULP1	trans	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93550000-93557400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:93551800-93563400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:93552000-93563400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr9:93552600-93556800	Weak transcription	Fetal Kidney	kidney
5	chr9:93552800-93556200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr9:93555600-93556200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr9:93555600-93556600	ZNF genes & repeats	GM12878-XiMat	blood
8	chr9:93555600-93557600	Enhancers	Primary B cells from cord blood	blood
9	chr9:93556000-93557400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr9:93556000-93563400	Enhancers	Primary monocytes fromperipheralblood	blood

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