Variant report

Variant	rs290276
Chromosome Location	chr9:93545268-93545269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93535425..93537144-chr9:93544077..93545939,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10448310	0.95[ASN][1000 genomes]
rs10993693	0.93[ASN][1000 genomes]
rs12350798	0.91[ASN][1000 genomes]
rs1319677	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1333634	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1333635	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1333637	0.95[ASN][1000 genomes]
rs188313	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2562396	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2562397	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2613308	0.96[AMR][1000 genomes]
rs2774260	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2780701	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2780702	0.96[AMR][1000 genomes]
rs290266	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs290268	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs290271	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs290274	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs290987	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs290988	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs290989	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs290990	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs290991	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs290993	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs290994	0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs290997	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs291006	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs772407	0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs94626	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv893567	chr9:93519280-93609668	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs290276	SYK	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93541200-93545600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:93541400-93545600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr9:93541400-93545600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:93541800-93551600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:93542600-93545400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:93542600-93545600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:93542600-93545600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:93542800-93545800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:93543600-93547000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr9:93543600-93548000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr9:93543600-93549800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:93543800-93545400	Enhancers	Primary B cells from cord blood	blood
13	chr9:93543800-93546200	Enhancers	Primary B cells from peripheral blood	blood
14	chr9:93544000-93545600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:93544600-93546800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr9:93544800-93545800	Weak transcription	Stomach Mucosa	stomach
17	chr9:93545000-93545400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:93545000-93545400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:93545000-93546000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr9:93545000-93546000	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links