Variant report

Variant	rs10450890
Chromosome Location	chr14:68404122-68404123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68403008..68415592-chr14:69254956..69264690,41	MCF-7	breast:
2	chr14:68401051..68404375-chr14:68404453..68408643,4	K562	blood:
3	chr14:68404009..68415107-chr14:68656381..68664155,17	MCF-7	breast:
4	chr14:68403242..68413680-chr14:69255078..69264293,34	MCF-7	breast:
5	chr14:68303849..68305592-chr14:68401335..68404322,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10450922	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10450923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10450924	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34175580	1.00[AMR][1000 genomes]
rs34416161	1.00[AMR][1000 genomes]
rs34743060	0.83[AFR][1000 genomes]
rs34786245	0.83[AFR][1000 genomes]
rs34794289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35092949	1.00[AMR][1000 genomes]
rs35158848	1.00[AMR][1000 genomes]
rs35190015	1.00[AMR][1000 genomes]
rs35580395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36091262	1.00[AMR][1000 genomes]
rs8016410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68395400-68408000	Weak transcription	Ovary	ovary
2	chr14:68400200-68404200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:68400400-68407000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:68400800-68404400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:68400800-68405200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:68401000-68406200	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:68401200-68405000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:68401200-68407000	Weak transcription	Stomach Mucosa	stomach
9	chr14:68401200-68407200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:68401200-68407200	Weak transcription	Brain Anterior Caudate	brain
11	chr14:68401200-68407200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:68401400-68404200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:68401400-68404800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:68401400-68405600	Weak transcription	Liver	Liver
15	chr14:68401600-68404200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:68401600-68404800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:68401600-68405400	Weak transcription	Placenta	Placenta
18	chr14:68401600-68406200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr14:68401600-68406400	Weak transcription	NHDF-Ad	bronchial
20	chr14:68401600-68407000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:68401600-68407000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr14:68401600-68407000	Weak transcription	HSMMtube	muscle
23	chr14:68401600-68407000	Weak transcription	NHLF	lung
24	chr14:68401600-68407200	Weak transcription	Fetal Brain Male	brain
25	chr14:68401600-68407200	Weak transcription	HSMM	muscle
26	chr14:68401600-68407600	Weak transcription	Brain Angular Gyrus	brain
27	chr14:68401600-68407600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr14:68401800-68404200	Weak transcription	Fetal Stomach	stomach
29	chr14:68401800-68404400	Weak transcription	Colon Smooth Muscle	Colon
30	chr14:68401800-68406400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:68401800-68407000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:68401800-68407000	Weak transcription	Fetal Kidney	kidney
33	chr14:68401800-68407200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr14:68401800-68407400	Weak transcription	Brain Germinal Matrix	brain
35	chr14:68401800-68407800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr14:68402200-68404600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr14:68402200-68407600	Weak transcription	Fetal Thymus	thymus
38	chr14:68402400-68404200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr14:68402400-68404400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr14:68403000-68404200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr14:68403000-68406800	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr14:68403000-68407000	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr14:68403200-68404600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:68403200-68404800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:68403200-68407200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr14:68403400-68405000	Enhancers	NHEK	skin
47	chr14:68403600-68404400	Enhancers	HUVEC	blood vessel
48	chr14:68403600-68404800	Weak transcription	Fetal Lung	lung
49	chr14:68403800-68404200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:68403800-68404200	Enhancers	Muscle Satellite Cultured Cells	--

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