Variant report

Variant	rs34794289
Chromosome Location	chr14:68408190-68408191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:40)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68405383..68414524-chr14:68603693..68608960,22	MCF-7	breast:
2	chr14:68405658..68408648-chr14:69273942..69276628,2	MCF-7	breast:
3	chr14:68407825..68409663-chr14:68862342..68864207,2	MCF-7	breast:
4	chr14:68405207..68413374-chr14:68603625..68613921,22	MCF-7	breast:
5	chr14:68304077..68306531-chr14:68406424..68408900,2	MCF-7	breast:
6	chr14:68405721..68408476-chr14:68436012..68438843,2	MCF-7	breast:
7	chr14:68407550..68410213-chr14:68431629..68433238,2	MCF-7	breast:
8	chr14:68407164..68408664-chr14:68656866..68659187,2	MCF-7	breast:
9	chr14:68406185..68411686-chr14:68720403..68727836,10	MCF-7	breast:
10	chr14:68406488..68409167-chr14:68711132..68714083,3	MCF-7	breast:
11	chr14:68406502..68410391-chr14:69284099..69289375,6	MCF-7	breast:
12	chr14:68401051..68404375-chr14:68404453..68408643,4	K562	blood:
13	chr14:68403008..68415592-chr14:69254956..69264690,41	MCF-7	breast:
14	chr14:68351177..68353936-chr14:68408156..68410622,2	MCF-7	breast:
15	chr14:68407980..68410923-chr14:68417842..68420076,2	K562	blood:
16	chr14:68408049..68410291-chr14:68611214..68613835,3	MCF-7	breast:
17	chr14:68359134..68361352-chr14:68406025..68408962,2	MCF-7	breast:
18	chr14:68407338..68412061-chr14:68925199..68928533,5	MCF-7	breast:
19	chr14:68406857..68408477-chr14:68739231..68740855,2	MCF-7	breast:
20	chr14:68406192..68411564-chr14:69279428..69286293,11	MCF-7	breast:
21	chr14:68406980..68410129-chr14:68693689..68698967,5	MCF-7	breast:
22	chr14:68405978..68408761-chr14:68632650..68634652,2	MCF-7	breast:
23	chr14:68405495..68411980-chr14:69250946..69254866,9	MCF-7	breast:
24	chr14:68406708..68410646-chr14:69052499..69056687,4	MCF-7	breast:
25	chr14:68407844..68414968-chr14:68428702..68432615,7	MCF-7	breast:
26	chr14:68405745..68408366-chr14:68697948..68699941,3	MCF-7	breast:
27	chr14:68407559..68409151-chr14:68644615..68646770,2	MCF-7	breast:
28	chr14:68407881..68410251-chr14:68645249..68646841,2	MCF-7	breast:
29	chr14:68406762..68412382-chr14:68425953..68431173,8	MCF-7	breast:
30	chr14:68405746..68408665-chr14:68647500..68650644,3	MCF-7	breast:
31	chr14:68407418..68410166-chr14:68654124..68655771,2	MCF-7	breast:
32	chr14:68407343..68410074-chr14:68773850..68776325,3	MCF-7	breast:
33	chr14:68404009..68415107-chr14:68656381..68664155,17	MCF-7	breast:
34	chr14:68406746..68408855-chr14:68770868..68773760,2	MCF-7	breast:
35	chr14:68407933..68410630-chr14:69252286..69254725,3	MCF-7	breast:
36	chr14:68403242..68413680-chr14:69255078..69264293,34	MCF-7	breast:
37	chr14:68407127..68413734-chr14:68709753..68718255,16	MCF-7	breast:
38	chr14:68408062..68409721-chr14:68415116..68416727,2	MCF-7	breast:
39	chr14:68302059..68305269-chr14:68407604..68409424,3	MCF-7	breast:
40	chr14:68406606..68409324-chr14:68699073..68700717,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10450890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10450922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10450923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10450924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34175580	1.00[AMR][1000 genomes]
rs34416161	1.00[AMR][1000 genomes]
rs34743060	0.83[AFR][1000 genomes]
rs34786245	0.83[AFR][1000 genomes]
rs35092949	1.00[AMR][1000 genomes]
rs35158848	1.00[AMR][1000 genomes]
rs35190015	1.00[AMR][1000 genomes]
rs35580395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36091262	1.00[AMR][1000 genomes]
rs8016410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68403800-68409400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr14:68404000-68409600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:68404200-68409600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:68404600-68408200	Weak transcription	Esophagus	oesophagus
5	chr14:68404800-68409000	Enhancers	Fetal Lung	lung
6	chr14:68406200-68408400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr14:68406200-68409000	Enhancers	Fetal Muscle Leg	muscle
8	chr14:68406200-68409400	Enhancers	HepG2	liver
9	chr14:68406400-68408400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:68406800-68408200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:68406800-68408600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:68406800-68408600	Enhancers	Placenta	Placenta
13	chr14:68406800-68411800	Enhancers	Fetal Stomach	stomach
14	chr14:68406800-68412000	Enhancers	Colon Smooth Muscle	Colon
15	chr14:68407000-68408400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr14:68407000-68408400	Enhancers	Pancreas	Pancrea
17	chr14:68407000-68408600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:68407000-68408600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:68407000-68408600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr14:68407000-68408600	Enhancers	HMEC	breast
21	chr14:68407000-68408800	Enhancers	Stomach Mucosa	stomach
22	chr14:68407000-68408800	Enhancers	HSMMtube	muscle
23	chr14:68407000-68409200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr14:68407000-68409400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr14:68407000-68409400	Enhancers	Fetal Kidney	kidney
26	chr14:68407000-68409400	Enhancers	Osteobl	bone
27	chr14:68407000-68411800	Enhancers	Rectal Smooth Muscle	rectum
28	chr14:68407000-68412000	Enhancers	NHLF	lung
29	chr14:68407200-68408400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:68407200-68408400	Enhancers	Brain Substantia Nigra	brain
31	chr14:68407200-68408400	Enhancers	Fetal Brain Male	brain
32	chr14:68407200-68408600	Enhancers	HSMM	muscle
33	chr14:68407200-68408600	Enhancers	NH-A	brain
34	chr14:68407200-68408800	Enhancers	Aorta	Aorta
35	chr14:68407200-68409000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:68407200-68409400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr14:68407200-68409400	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr14:68407200-68409400	Enhancers	Brain Cingulate Gyrus	brain
39	chr14:68407200-68409400	Enhancers	Fetal Intestine Small	intestine
40	chr14:68407200-68409400	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr14:68407200-68409400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr14:68407200-68409400	Enhancers	NHEK	skin
43	chr14:68407200-68409600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr14:68407200-68409600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:68407200-68411800	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr14:68407400-68408200	Enhancers	Brain Germinal Matrix	brain
47	chr14:68407400-68408200	Enhancers	Fetal Heart	heart
48	chr14:68407400-68408600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:68407400-68409000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:68407400-68409400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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