Variant report

Variant	rs10450924
Chromosome Location	chr14:68451711-68451712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10450890	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10450922	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10450923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34175580	1.00[AMR][1000 genomes]
rs34416161	1.00[AMR][1000 genomes]
rs34743060	0.83[AFR][1000 genomes]
rs34786245	0.83[AFR][1000 genomes]
rs34794289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35092949	1.00[AMR][1000 genomes]
rs35158848	1.00[AMR][1000 genomes]
rs35190015	1.00[AMR][1000 genomes]
rs35580395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36091262	1.00[AMR][1000 genomes]
rs8016410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68442600-68454400	Weak transcription	Fetal Kidney	kidney
2	chr14:68445800-68454600	Weak transcription	Ovary	ovary
3	chr14:68449800-68454400	Weak transcription	HMEC	breast
4	chr14:68450000-68453600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr14:68450200-68453000	Weak transcription	Fetal Lung	lung
6	chr14:68450200-68454000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:68450200-68465400	Weak transcription	HepG2	liver
8	chr14:68450400-68452800	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:68450600-68457000	Weak transcription	Stomach Mucosa	stomach
10	chr14:68451000-68454000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:68451000-68454000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:68451200-68451800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:68451200-68455000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:68451400-68452600	Weak transcription	NHLF	lung
15	chr14:68451400-68453400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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