Variant report

Variant	rs10450939
Chromosome Location	chr14:81825202-81825203
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10450894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10450940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621378	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11623515	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11623634	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11628716	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12434395	0.85[ASN][1000 genomes]
rs12434434	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12435764	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12436146	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012796	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28818872	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3853416	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55921727	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55991247	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56039699	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56161464	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56223983	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58532062	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59969857	0.85[EUR][1000 genomes]
rs61560331	0.91[EUR][1000 genomes]
rs61986576	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61986593	0.87[EUR][1000 genomes]
rs61986597	0.86[EUR][1000 genomes]
rs61986598	0.83[EUR][1000 genomes]
rs61986599	0.85[EUR][1000 genomes]
rs6574646	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574647	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68143923	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7146788	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7146802	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147012	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7147254	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147969	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7151434	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153469	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72703728	0.81[EUR][1000 genomes]
rs8007219	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8008024	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009083	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009171	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010181	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011477	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8011609	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8011624	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8014260	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8014636	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8016255	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8020575	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv902119	chr14:81810945-81884857	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81803800-81832200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:81808400-81829200	Weak transcription	HMEC	breast
3	chr14:81808800-81830200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:81813400-81829800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:81820800-81826200	Weak transcription	Psoas Muscle	Psoas
6	chr14:81820800-81836400	Weak transcription	K562	blood
7	chr14:81822000-81831200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:81822000-81834600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:81822200-81830600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr14:81824600-81830200	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:81824800-81826000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links