Variant report

Variant	rs61986599
Chromosome Location	chr14:81860917-81860918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81859822..81862537-chr14:81898596..81900276,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10450894	0.85[EUR][1000 genomes]
rs10450939	0.85[EUR][1000 genomes]
rs10450940	0.85[EUR][1000 genomes]
rs11621378	0.85[EUR][1000 genomes]
rs12432021	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12435764	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12436146	0.85[EUR][1000 genomes]
rs2012796	0.83[EUR][1000 genomes]
rs2371597	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28818872	0.82[EUR][1000 genomes]
rs4083463	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55991247	0.84[EUR][1000 genomes]
rs56161464	0.84[EUR][1000 genomes]
rs56223983	0.84[EUR][1000 genomes]
rs59969857	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61986593	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61986597	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61986598	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574646	0.85[EUR][1000 genomes]
rs68143923	0.81[EUR][1000 genomes]
rs7146802	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7147254	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7153469	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72703728	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8007219	0.82[EUR][1000 genomes]
rs8008024	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8009171	0.83[EUR][1000 genomes]
rs8020575	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv902119	chr14:81810945-81884857	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81836400-81885800	Weak transcription	Gastric	stomach
2	chr14:81850400-81864000	Weak transcription	Psoas Muscle	Psoas
3	chr14:81852400-81861000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:81852400-81862600	Weak transcription	Hela-S3	cervix
5	chr14:81852600-81861600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:81852800-81863800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:81852800-81899800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:81853200-81862400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:81853200-81866400	Weak transcription	Brain Substantia Nigra	brain
10	chr14:81853200-81866600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:81853400-81861000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:81853400-81861000	Weak transcription	Brain Angular Gyrus	brain
13	chr14:81853600-81861000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:81855000-81861200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:81855000-81866000	Strong transcription	K562	blood
16	chr14:81855200-81864800	Strong transcription	Primary hematopoietic stem cells	blood
17	chr14:81855200-81864800	Weak transcription	Small Intestine	intestine
18	chr14:81855800-81861000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:81856000-81861200	Weak transcription	Fetal Kidney	kidney
20	chr14:81856200-81861200	Strong transcription	Fetal Muscle Leg	muscle
21	chr14:81856800-81861400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:81857600-81864600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr14:81858000-81861000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr14:81858000-81861000	Strong transcription	Fetal Muscle Trunk	muscle
25	chr14:81858200-81862400	Weak transcription	NHDF-Ad	bronchial
26	chr14:81858200-81865600	Weak transcription	Fetal Brain Female	brain
27	chr14:81858200-81867000	Weak transcription	Brain Germinal Matrix	brain
28	chr14:81858800-81861000	Weak transcription	Fetal Intestine Small	intestine
29	chr14:81858800-81863800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr14:81858800-81864800	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr14:81859400-81866800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr14:81860000-81861000	Weak transcription	Placenta	Placenta
33	chr14:81860000-81861600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr14:81860000-81866200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr14:81860200-81861000	Weak transcription	Brain Hippocampus Middle	brain
36	chr14:81860200-81862000	Weak transcription	HMEC	breast
37	chr14:81860200-81864600	Strong transcription	Ovary	ovary
38	chr14:81860200-81867400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr14:81860400-81861000	Weak transcription	Spleen	Spleen
40	chr14:81860600-81861000	Weak transcription	Liver	Liver
41	chr14:81860600-81862400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:81860600-81865000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr14:81860800-81861000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr14:81860800-81861400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr14:81860800-81861600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:81860800-81861600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:81860800-81861600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr14:81860800-81861600	ZNF genes & repeats	Esophagus	oesophagus
49	chr14:81860800-81861800	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr14:81860800-81861800	ZNF genes & repeats	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links