Variant report

Variant	rs68143923
Chromosome Location	chr14:81809979-81809980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81806925..81809248-chr14:81809834..81812689,2	MCF-7	breast:
2	chr14:81807853..81809549-chr14:81809660..81812402,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10450894	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10450939	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10450940	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11621378	0.96[EUR][1000 genomes]
rs12435764	0.81[EUR][1000 genomes]
rs12436146	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2012796	0.98[EUR][1000 genomes]
rs28818872	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55921727	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55991247	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56161464	0.95[EUR][1000 genomes]
rs56223983	0.95[EUR][1000 genomes]
rs59969857	0.81[EUR][1000 genomes]
rs61560331	0.90[EUR][1000 genomes]
rs61986593	0.83[EUR][1000 genomes]
rs61986597	0.82[EUR][1000 genomes]
rs61986599	0.81[EUR][1000 genomes]
rs6574646	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6574647	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7146802	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7147254	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7151434	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7153469	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8007219	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8008024	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8009083	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8009171	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8010181	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8011477	0.88[EUR][1000 genomes]
rs8011609	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8011624	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8016255	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81778400-81810800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:81803800-81832200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:81804200-81820000	Weak transcription	K562	blood
4	chr14:81804800-81814200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:81805800-81814000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:81806000-81814200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:81806600-81810400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr14:81807400-81810400	Enhancers	Fetal Muscle Leg	muscle
9	chr14:81808000-81811600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr14:81808000-81820600	Weak transcription	Fetal Kidney	kidney
11	chr14:81808400-81829200	Weak transcription	HMEC	breast
12	chr14:81808600-81811800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:81808600-81820200	Weak transcription	NHEK	skin
14	chr14:81808800-81810400	Enhancers	Adipose Nuclei	Adipose
15	chr14:81808800-81830200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:81809000-81810000	Enhancers	Fetal Brain Female	brain
17	chr14:81809000-81810400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:81809000-81810600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:81809000-81813000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:81809400-81810200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:81809400-81810200	Enhancers	Brain Germinal Matrix	brain
22	chr14:81809400-81810200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr14:81809400-81811800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr14:81809400-81817600	Weak transcription	Brain Anterior Caudate	brain
25	chr14:81809600-81812200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr14:81809800-81811600	Weak transcription	Psoas Muscle	Psoas
27	chr14:81809800-81812600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links