Variant report

Variant	rs10451668
Chromosome Location	chr2:86525296-86525297
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86519380..86521878-chr2:86524185..86527077,2	K562	blood:
2	chr2:86476972..86477899-chr2:86524200..86525545,3	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10451631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10451665	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10451666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863062	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28527367	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35807694	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35943273	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3821015	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56657747	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56742104	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57006782	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57137376	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57279476	0.85[EUR][1000 genomes]
rs57412282	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57743711	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57786125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57924251	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58029983	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58141172	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58210919	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58287226	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58728311	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58996019	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59149450	0.88[ASN][1000 genomes]
rs59300790	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59409236	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59523869	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59567456	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59697218	0.82[ASN][1000 genomes]
rs60032974	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60067772	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60237707	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60295664	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60345058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60427833	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60474859	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60484746	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60791163	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60840060	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61392096	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61636758	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61669204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61700819	1.00[EUR][1000 genomes]
rs6716825	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6728494	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748079	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6760222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72938375	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72940115	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72940124	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72940126	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72940131	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72940149	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72940152	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72940160	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753918	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593666	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86514000-86529200	Weak transcription	Pancreas	Pancrea
2	chr2:86518400-86527600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:86521000-86525600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:86521600-86528600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:86522600-86525800	Weak transcription	Fetal Brain Male	brain
6	chr2:86522600-86525800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:86522600-86529000	Weak transcription	Small Intestine	intestine
8	chr2:86522800-86525600	Weak transcription	Fetal Intestine Small	intestine
9	chr2:86523400-86525600	Weak transcription	Fetal Intestine Large	intestine
10	chr2:86523600-86525600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:86523600-86525800	Weak transcription	Fetal Brain Female	brain
12	chr2:86524000-86525600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:86524000-86525800	Enhancers	Aorta	Aorta
14	chr2:86524000-86526400	Enhancers	Rectal Smooth Muscle	rectum
15	chr2:86524000-86526400	Enhancers	Right Atrium	heart
16	chr2:86524000-86526800	Enhancers	Left Ventricle	heart
17	chr2:86524000-86527600	Enhancers	Psoas Muscle	Psoas
18	chr2:86524000-86527800	Enhancers	Right Ventricle	heart
19	chr2:86524000-86529600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr2:86524200-86525400	Enhancers	Fetal Stomach	stomach
21	chr2:86524200-86525600	Weak transcription	Lung	lung
22	chr2:86524200-86527200	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr2:86524200-86530000	Enhancers	Brain Hippocampus Middle	brain
24	chr2:86524200-86530200	Enhancers	Colon Smooth Muscle	Colon
25	chr2:86524200-86533600	Enhancers	Fetal Lung	lung
26	chr2:86524400-86525600	Weak transcription	Esophagus	oesophagus
27	chr2:86524400-86525800	Enhancers	Brain Cingulate Gyrus	brain
28	chr2:86524400-86526800	Enhancers	Fetal Heart	heart
29	chr2:86524600-86525800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:86524600-86533400	Enhancers	Fetal Muscle Leg	muscle
31	chr2:86524800-86525600	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr2:86524800-86530200	Enhancers	Brain Angular Gyrus	brain
33	chr2:86525000-86525600	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr2:86525000-86529200	Enhancers	Fetal Muscle Trunk	muscle
35	chr2:86525000-86530200	Enhancers	HSMMtube	muscle
36	chr2:86525200-86525400	Enhancers	Spleen	Spleen
37	chr2:86525200-86525800	Enhancers	Brain Substantia Nigra	brain
38	chr2:86525200-86529600	Enhancers	Brain Anterior Caudate	brain
39	chr2:86525200-86530200	Enhancers	Brain Germinal Matrix	brain

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