Variant report

Variant	rs58210919
Chromosome Location	chr2:86542746-86542747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86535378..86537907-chr2:86539539..86542949,4	MCF-7	breast:
2	chr2:86541740..86544512-chr2:86545041..86548345,3	MCF-7	breast:
3	chr2:86536580..86540172-chr2:86541032..86544003,3	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10451631	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10451665	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10451666	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10451668	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1863062	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28527367	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35807694	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35943273	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3821015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56657747	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56742104	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57006782	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57137376	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57279476	0.82[EUR][1000 genomes]
rs57412282	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57743711	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57786125	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57924251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58029983	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58141172	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58287226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58728311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58996019	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59149450	0.82[ASN][1000 genomes]
rs59300790	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59409236	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59523869	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59567456	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59697218	0.88[ASN][1000 genomes]
rs60032974	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60067772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60237707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60295664	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60345058	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60427833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60474859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60484746	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60791163	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60840060	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61392096	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61636758	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61669204	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61700819	0.96[EUR][1000 genomes]
rs6716825	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6728494	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6748079	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6760222	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72938375	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72940115	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72940124	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72940126	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72940131	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72940149	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72940152	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72940160	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs753918	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7593666	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86533000-86542800	Weak transcription	Fetal Intestine Small	intestine
2	chr2:86533200-86563000	Weak transcription	Brain Germinal Matrix	brain
3	chr2:86536200-86559800	Weak transcription	HSMMtube	muscle
4	chr2:86537600-86563000	Weak transcription	Brain Anterior Caudate	brain
5	chr2:86539400-86552000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:86540800-86543000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr2:86541000-86543000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr2:86541200-86543200	Enhancers	Right Ventricle	heart
9	chr2:86541400-86543200	Enhancers	Left Ventricle	heart
10	chr2:86541400-86551600	Weak transcription	Fetal Brain Female	brain
11	chr2:86541600-86547000	Weak transcription	Colon Smooth Muscle	Colon
12	chr2:86542000-86543000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr2:86542200-86543000	Enhancers	Fetal Heart	heart
14	chr2:86542200-86543000	Enhancers	Right Atrium	heart
15	chr2:86542200-86543200	Enhancers	Fetal Muscle Leg	muscle
16	chr2:86542200-86559400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr2:86542400-86542800	Active TSS	Spleen	Spleen
18	chr2:86542400-86543000	Enhancers	Pancreas	Pancrea
19	chr2:86542400-86543000	Enhancers	Psoas Muscle	Psoas
20	chr2:86542600-86542800	Bivalent Enhancer	Fetal Stomach	stomach

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