Variant report

Variant	rs60474859
Chromosome Location	chr2:86554121-86554122
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86552994..86554787-chr2:86563160..86565673,2	MCF-7	breast:
2	chr2:86552980..86555003-chr2:86557144..86560058,2	K562	blood:

Variant related genes	Relation type
ENSG00000068615	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10451631	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10451665	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10451666	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10451668	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1863062	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28527367	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35807694	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35943273	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3821015	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56657747	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56742104	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57006782	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57137376	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57412282	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57743711	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57786125	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57924251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58029983	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58141172	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58210919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58287226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58728311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58996019	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59149450	0.82[ASN][1000 genomes]
rs59300790	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59409236	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59523869	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59567456	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59697218	0.88[ASN][1000 genomes]
rs60032974	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60067772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60237707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60295664	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60345058	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60427833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60484746	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60791163	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60840060	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61392096	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61636758	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61669204	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61700819	0.89[EUR][1000 genomes]
rs6716825	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6728494	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6748079	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6760222	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72938375	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72940115	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72940124	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72940126	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72940131	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72940149	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72940152	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72940160	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs753918	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7593666	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86533200-86563000	Weak transcription	Brain Germinal Matrix	brain
2	chr2:86536200-86559800	Weak transcription	HSMMtube	muscle
3	chr2:86537600-86563000	Weak transcription	Brain Anterior Caudate	brain
4	chr2:86542200-86559400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:86543000-86556800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:86546800-86555000	Weak transcription	Left Ventricle	heart
7	chr2:86549200-86563000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:86551000-86555800	Weak transcription	Fetal Intestine Small	intestine
9	chr2:86551600-86559200	Weak transcription	Fetal Brain Male	brain
10	chr2:86552200-86563800	Weak transcription	Aorta	Aorta
11	chr2:86552400-86556800	Weak transcription	Fetal Brain Female	brain
12	chr2:86554000-86554200	Enhancers	Colon Smooth Muscle	Colon
13	chr2:86554000-86554600	Enhancers	Right Atrium	heart
14	chr2:86554000-86555400	Enhancers	Skeletal Muscle Male	skeletal muscle

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