Variant report

Variant	rs10452139
Chromosome Location	chr4:97083264-97083265
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10000218	1.00[AMR][1000 genomes]
rs10452169	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10452170	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10452171	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10452172	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28412255	1.00[AMR][1000 genomes]
rs28432220	1.00[AMR][1000 genomes]
rs28539992	1.00[AMR][1000 genomes]
rs28601677	1.00[AMR][1000 genomes]
rs73840268	1.00[AMR][1000 genomes]
rs73840289	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97080000-97083600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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